Detailed information NTG0548906

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: J4H94_RS19350
• Genome accession: NZ_CP071899
• Coordinates: 4125342..4126610 (-)
• Length: 422 a.a.
• NCBI ID: WP_208216961.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain TPA3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4120342..4131610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4H94_RS19335 (J4H94_19335)	rpoH	4122692..4123546 (-)	855	WP_003297176.1	RNA polymerase sigma factor RpoH	-
J4H94_RS19340 (J4H94_19340)	ftsX	4123658..4124677 (-)	1020	WP_102838920.1	permease-like cell division protein FtsX	-
J4H94_RS19345 (J4H94_19345)	ftsE	4124674..4125345 (-)	672	WP_045665759.1	cell division ATP-binding protein FtsE	-
J4H94_RS19350 (J4H94_19350)	pilA	4125342..4126610 (-)	1269	WP_208216961.1	signal recognition particle-docking protein FtsY	Machinery gene
J4H94_RS19355 (J4H94_19355)	-	4126839..4128191 (+)	1353	WP_208216962.1	pitrilysin family protein	-
J4H94_RS19360 (J4H94_19360)	-	4128184..4129716 (+)	1533	WP_208216963.1	pitrilysin family protein	-
J4H94_RS19365 (J4H94_19365)	rsmD	4129716..4130318 (+)	603	WP_079328521.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
J4H94_RS19370 (J4H94_19370)	-	4130331..4130735 (-)	405	WP_013984344.1	hypothetical protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 44958.27 Da
• Isoelectric Point: 4.6538

>NTDB_id=548906 J4H94_RS19350 WP_208216961.1 4125342..4126610(-) (pilA) [Stutzerimonas frequens strain TPA3]
MFGSNDDKKTPAEPGEKKGLFGWLRKKPQPAPAEQPAAEQPDSESVEQTGAPVESPVATPQEEQPARVVEADMQPAEEIE
PVLLHPEPEPEPEPDPEPVPAPVVATAPEAPTKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTA
DVGVEATTAIMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAIDAGKRPCVILVVGVNGVGKTTTIGKLAKKL
QLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVVAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEEL
KKVRRVMGKLDESAPHEVLLVLDAGTGQNAINQTKQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGEGI
DDLRTFEADAFVKALFSQREDA

Nucleotide

• Length: 1269 bp

>NTDB_id=548906 J4H94_RS19350 WP_208216961.1 4125342..4126610(-) (pilA) [Stutzerimonas frequens strain TPA3]
ATGTTTGGTTCCAACGACGACAAGAAGACGCCGGCCGAGCCCGGTGAAAAGAAAGGCCTGTTCGGCTGGCTGCGCAAGAA
ACCGCAGCCCGCACCGGCAGAACAGCCCGCCGCCGAACAGCCGGACAGCGAATCGGTCGAGCAGACCGGGGCGCCTGTCG
AATCGCCTGTCGCTACACCTCAGGAAGAGCAGCCGGCGCGCGTGGTCGAGGCCGATATGCAGCCGGCTGAGGAGATAGAG
CCGGTGCTGCTGCACCCTGAACCCGAACCCGAACCCGAACCCGATCCGGAGCCGGTACCTGCCCCGGTCGTGGCGACCGC
GCCGGAGGCCCCAACCAAGCTTGGCTTCTTCGCTCGCCTGCGCCAGGGGCTGTCGAAAACCAGCGCCAGCATTGGCGAAG
GCATGGCCAGCCTGTTCCTCGGCAAGAAGGCCATCGACGACGATCTGCTCGACGAACTGGAAACCCGCCTGCTGACCGCC
GACGTCGGCGTCGAGGCGACCACCGCGATCATGCAGAATCTCACCCGGCGCGTCTCGCGCAAGGAGCTGGCCGACAGCGG
CGCGCTCTACACCGCGCTGCAGGAAGAACTCGTTGGCCTGCTCAAGCCGGTCGAGCAGCCGCTGGCGATCGATGCTGGCA
AGCGCCCGTGTGTGATCCTGGTGGTCGGCGTGAACGGCGTCGGCAAGACCACCACCATCGGCAAGCTGGCCAAGAAGCTG
CAGCTCGACGGCAAGAAGGTCATGCTCGCCGCCGGCGACACCTTCCGCGCCGCGGCGGTGGAGCAGCTGCAGGTCTGGGG
CGAGCGCAACGGCATCCCGGTGGTCGCCCAGCACACCGGTGCCGACTCCGCCTCGGTGATCTTCGATGCGGTGCAGGCGG
CCAAGGCGCGCGGCATCGATGTGCTGATTGCCGACACCGCGGGCCGTCTGCATACCAAGGACAACCTGATGGAAGAGCTG
AAGAAAGTCCGTCGGGTGATGGGCAAGCTCGACGAGTCGGCTCCCCACGAAGTCCTGCTGGTACTCGACGCCGGCACTGG
CCAGAACGCCATCAACCAGACCAAGCAGTTCAACCAGGCGGTCGAGCTGACCGGGCTGGCACTGACCAAGCTCGACGGCA
CCGCCAAGGGCGGCGTGATCTTCGCGCTGGCCAAGCAGTTCGGCACGCCGATCCGCTACATCGGCGTGGGTGAAGGCATC
GACGATCTGCGCACCTTCGAGGCCGACGCCTTCGTCAAGGCGCTGTTCTCCCAGCGGGAAGACGCATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (132-197)

• SRP54-type protein, GTPase domain (SRP54) (217-416)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.057	100	0.493