Detailed information NTG0548897

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: J4H94_RS12800
• Genome accession: NZ_CP071899
• Coordinates: 2723540..2725765 (-)
• Length: 741 a.a.
• NCBI ID: WP_208216304.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain TPA3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2718540..2730765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4H94_RS12765 (J4H94_12765)	murB	2718930..2719949 (-)	1020	WP_208216300.1	UDP-N-acetylmuramate dehydrogenase	-
J4H94_RS12770 (J4H94_12770)	-	2719946..2720413 (-)	468	WP_200595478.1	low molecular weight protein-tyrosine-phosphatase	-
J4H94_RS12775 (J4H94_12775)	kdsB	2720415..2721179 (-)	765	WP_208216301.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
J4H94_RS12780 (J4H94_12780)	-	2721176..2721361 (-)	186	WP_011913743.1	Trm112 family protein	-
J4H94_RS12785 (J4H94_12785)	lpxK	2721407..2722411 (-)	1005	WP_208216302.1	tetraacyldisaccharide 4'-kinase	-
J4H94_RS12790 (J4H94_12790)	-	2722411..2722839 (-)	429	WP_208216303.1	biopolymer transporter ExbD	-
J4H94_RS12795 (J4H94_12795)	-	2722836..2723468 (-)	633	WP_063539899.1	MotA/TolQ/ExbB proton channel family protein	-
J4H94_RS12800 (J4H94_12800)	comA	2723540..2725765 (-)	2226	WP_208216304.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
J4H94_RS12805 (J4H94_12805)	-	2725910..2726425 (+)	516	WP_063539900.1	DUF2062 domain-containing protein	-
J4H94_RS12810 (J4H94_12810)	-	2726438..2727682 (-)	1245	WP_208218688.1	lipoprotein-releasing ABC transporter permease subunit	-
J4H94_RS12815 (J4H94_12815)	lolD	2727682..2728371 (-)	690	WP_063539901.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
J4H94_RS12820 (J4H94_12820)	-	2728379..2729626 (-)	1248	WP_102840158.1	lipoprotein-releasing ABC transporter permease subunit	-
J4H94_RS12825 (J4H94_12825)	-	2729660..2730295 (+)	636	WP_081253726.1	PilZ domain-containing protein	-
J4H94_RS12830 (J4H94_12830)	-	2730299..2730607 (+)	309	WP_110776483.1	phosphodiesterase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80615.96 Da
• Isoelectric Point: 9.6705

>NTDB_id=548897 J4H94_RS12800 WP_208216304.1 2723540..2725765(-) (comA) [Stutzerimonas frequens strain TPA3]
MRTRMLALAAGLVLPRFLPALPAQWFCAALAAVGLLLLLRVRWVAPGLFLLGLSWACYQSQSAIDDRLPASMDGRTFWIE
GRVVGLPSRIGNVVRFELDDIQSRHAGLPSTVRLSWYDGPLLQAGERWRLAARLKRPHGMVNPHSFDYEAWLLARRIGAT
GTIKAGERLTASRASDGWRDQLRARLLAVPASDRQGAIAALVVGDDSGLSRGDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLARLGAWPRRLPWLPWACGLALSGALAYGWLAGFEVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLI
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWRWWKALTRAQWAATLGLLPLLLALGLPISASGPLANLLAVPWVSLTVPF
ALLGTLLLPLGGAGEALLSMVGFSLALLFDVLAAIASWQPAWIAVGLPPLALAMIGLGVLLLLLPAGIPLRSLGFVLLLP
LAFPPRVEVPEGRAQVWVLDVGQGLAVLVRTREHALLYDAGPKQGEFDTGERVVVPSLRTLGVTRLDLLLLSHADNDHSG
GAEAVQRLLRVERVVSGEPSRHAPDLGAERCESGSSWQWNDVHFSLWQWQAAQDSNQQSCVLQIEANGERILLTGDVDQS
AEQAWLASEQQMSSHWLLLPHHGSRSSSSGPFLQGVAAQAALISRSLHNPFGHPHPSVTARLEAFDIKAYDTALHGAIRI
DLGSFSPPELQRSQRRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=548897 J4H94_RS12800 WP_208216304.1 2723540..2725765(-) (comA) [Stutzerimonas frequens strain TPA3]
ATGCGCACAAGGATGCTTGCGCTCGCCGCGGGCCTGGTCCTGCCACGCTTCCTTCCTGCCTTGCCCGCGCAGTGGTTCTG
TGCGGCGCTGGCGGCTGTCGGACTGTTGCTGCTGCTGCGCGTCCGCTGGGTGGCGCCAGGCCTGTTTCTGCTGGGCTTGA
GCTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGGTTGCCAGCGTCCATGGACGGTCGCACGTTCTGGATCGAG
GGGCGGGTAGTGGGGTTGCCCAGCCGTATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATTCAATCGCGCCATGCCGG
GTTGCCGTCGACGGTGCGGCTGTCCTGGTATGACGGTCCGCTGCTGCAAGCCGGGGAGCGCTGGCGGCTGGCGGCGCGAC
TGAAACGGCCGCATGGCATGGTCAACCCGCATTCCTTCGATTACGAAGCCTGGTTGCTGGCGCGACGTATCGGCGCCACC
GGCACGATCAAGGCGGGTGAGCGCCTGACGGCTTCGAGGGCAAGCGACGGATGGCGCGATCAGCTTCGGGCGCGGCTCCT
GGCCGTTCCGGCATCTGATCGGCAGGGCGCCATCGCGGCGCTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGGCGACT
GGCAGGTGCTGCAGGACACCGGCACCGTCCACCTGATGGTCATCTCCGGGCAGCACATCGGCATGTTGGCGGGGCTGCTC
TATGGTCTGGTCGCATTGCTGGCTCGCCTGGGTGCGTGGCCGCGGCGGTTGCCATGGTTGCCCTGGGCGTGCGGGCTGGC
GTTAAGCGGCGCGCTGGCCTATGGCTGGCTGGCCGGTTTCGAGGTGCCGGTGCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGGTTGCGCTTTCGCCATCTGGGCGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGCGTCCTGCTGATC
GATCCCCTGGTGACACTGCAGCCCGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGGCG
GCTCGGCTCATGGCGCTGGTGGAAGGCCCTGACTCGGGCGCAGTGGGCGGCGACCCTCGGCCTGCTTCCGCTGTTGCTCG
CCCTGGGGCTGCCGATAAGCGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTACCCTGGGTGAGTCTCACCGTGCCCTTT
GCGTTGCTTGGTACGCTGCTGCTGCCGCTGGGCGGGGCTGGCGAAGCGTTGCTGTCGATGGTGGGCTTTTCGCTGGCACT
ACTTTTCGATGTGCTGGCGGCGATTGCGTCGTGGCAGCCCGCCTGGATTGCGGTCGGCCTGCCGCCCTTGGCTCTGGCGA
TGATCGGGCTGGGTGTGTTGTTGCTGTTGCTGCCAGCCGGTATTCCGCTGCGTTCGCTGGGCTTTGTGCTGCTGTTGCCG
CTGGCATTCCCGCCTCGTGTCGAGGTCCCGGAGGGCCGAGCGCAGGTCTGGGTGCTGGATGTGGGCCAGGGCCTGGCGGT
GCTGGTGCGCACCCGCGAGCATGCACTGCTTTACGATGCCGGGCCGAAGCAGGGCGAGTTCGACACGGGCGAGCGGGTGG
TGGTCCCATCGCTCCGGACCCTTGGCGTGACTCGGTTGGACCTGCTGTTGCTTAGCCATGCCGATAATGATCATTCGGGC
GGTGCGGAGGCGGTCCAGCGGCTGCTCCGGGTCGAGCGGGTGGTCAGTGGCGAGCCGTCTCGCCACGCGCCGGATCTGGG
CGCCGAACGTTGCGAAAGCGGTAGCAGCTGGCAGTGGAACGATGTGCACTTCAGTCTGTGGCAATGGCAGGCGGCGCAGG
ACAGCAACCAGCAGTCCTGCGTGCTGCAGATTGAGGCCAACGGTGAGCGAATCCTGCTCACCGGTGACGTCGACCAGTCC
GCCGAGCAGGCTTGGCTGGCAAGTGAGCAGCAGATGTCATCGCACTGGCTGCTGCTGCCCCATCACGGCAGCCGCAGCTC
CTCGTCGGGGCCGTTTCTGCAAGGCGTGGCCGCGCAAGCCGCGCTGATCTCGCGAAGTCTGCACAATCCGTTCGGCCACC
CGCACCCGAGCGTGACCGCGCGGCTCGAGGCGTTCGATATCAAGGCCTACGACACCGCGTTGCATGGCGCCATCCGGATC
GATCTGGGCAGTTTTTCGCCGCCAGAGCTGCAACGCTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-648)

• Domain of unknown function (DUF4131) (DUF4131) (23-168)

• Competence protein (Competence) (201-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	65.966	96.356	0.636
comA	Ralstonia pseudosolanacearum GMI1000	36.719	100	0.381