Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LRO88_RS00220 Genome accession   NZ_CP089148
Coordinates   41185..42012 (+) Length   275 a.a.
NCBI ID   WP_003226767.1    Uniprot ID   A0ABU0VCW3
Organism   Bacillus subtilis strain NIB353     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 36185..47012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS00195 efpO 37248..38690 (+) 1443 WP_021479734.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  LRO88_RS00200 tmk 38687..39325 (+) 639 WP_021479733.1 dTMP kinase -
  LRO88_RS00205 darA 39399..39728 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  LRO88_RS00210 yaaR 39741..40181 (+) 441 WP_009966249.1 YaaR family protein -
  LRO88_RS00215 holB 40193..41182 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  LRO88_RS00220 yaaT 41185..42012 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT Regulator
  LRO88_RS00225 yabA 42027..42386 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  LRO88_RS00230 trmNF 42445..43188 (+) 744 WP_021479732.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LRO88_RS00235 yazA 43175..43474 (+) 300 WP_159376582.1 GIY-YIG nuclease family protein -
  LRO88_RS00240 rsmI 43449..44327 (+) 879 WP_159376583.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LRO88_RS00245 abrB 44376..44666 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 31233.09 Da        Isoelectric Point: 4.7700

>NTDB_id=548894 LRO88_RS00220 WP_003226767.1 41185..42012(+) (yaaT) [Bacillus subtilis strain NIB353]
MYNVIGVRFKKAGKIYYFDPNGFHIEHDSCVIVETVRGVEYGQVVIANKQVDEHDVVLPLRKVIRVADERDLLIVEENKQ
EALSAFDICQKKVIEHGLDMKLVDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQLPDIGEMITTANGPAKVVGLNI
LERVLQVELINREKVIEYTWEELLEEGVVSAQTTD

Nucleotide


Download         Length: 828 bp        

>NTDB_id=548894 LRO88_RS00220 WP_003226767.1 41185..42012(+) (yaaT) [Bacillus subtilis strain NIB353]
TTGTACAATGTAATTGGTGTCCGCTTTAAGAAAGCGGGTAAAATATATTATTTTGATCCGAATGGATTTCATATAGAACA
TGACAGCTGCGTAATTGTAGAAACTGTCAGAGGCGTTGAGTACGGCCAGGTCGTAATTGCAAATAAACAGGTGGATGAGC
ATGATGTGGTGCTTCCCCTTCGAAAAGTGATACGTGTGGCTGACGAGCGCGATCTTCTCATTGTAGAAGAAAATAAACAG
GAAGCACTATCAGCATTTGATATCTGCCAAAAGAAAGTGATTGAGCATGGCTTGGATATGAAGCTGGTCGATGTTGAATT
CACGTTTGATCGCAATAAAGTCATTTTTTACTTCACTGCTGACGGCCGAGTCGACTTTAGAGAGCTTGTAAAGGATTTGG
CTTCTATCTTTAAGACAAGAATTGAGCTGCGCCAAATCGGAGTGAGGGATGAGGCAAAAATGCTCGGAGGAATCGGTCCT
TGCGGAAGAATGCTTTGCTGTTCAACGTTTCTTGGAGATTTTGAACCCGTTTCCATTAAAATGGCCAAGGATCAGAACTT
GTCTTTAAATCCTACGAAGATTTCGGGTCTTTGCGGACGATTGATGTGCTGTCTAAAATATGAGAACGATGAGTATGAGA
CGGCAAAAGAACAGCTTCCGGATATAGGAGAAATGATTACGACAGCAAACGGTCCCGCGAAGGTCGTCGGACTAAATATT
CTGGAACGGGTGCTTCAGGTGGAACTGATAAACCGTGAAAAAGTGATAGAATATACTTGGGAAGAGCTCTTGGAAGAGGG
CGTCGTATCCGCACAAACCACAGATTAA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(62-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

99.636

100

0.996