Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J4H94_RS06925 Genome accession   NZ_CP071899
Coordinates   1449588..1450631 (+) Length   347 a.a.
NCBI ID   WP_102840827.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain TPA3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1444588..1455631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4H94_RS06910 (J4H94_06910) - 1444898..1446328 (-) 1431 WP_208217848.1 YfjI family protein -
  J4H94_RS06915 (J4H94_06915) - 1447791..1448903 (+) 1113 WP_208217864.1 acyltransferase -
  J4H94_RS06920 (J4H94_06920) - 1449007..1449504 (+) 498 WP_208217866.1 CinA family protein -
  J4H94_RS06925 (J4H94_06925) recA 1449588..1450631 (+) 1044 WP_102840827.1 recombinase RecA Machinery gene
  J4H94_RS06930 (J4H94_06930) recX 1450637..1451107 (+) 471 WP_208217868.1 recombination regulator RecX -
  J4H94_RS06935 (J4H94_06935) - 1451179..1452270 (-) 1092 WP_152481057.1 LOG family protein -
  J4H94_RS06940 (J4H94_06940) - 1452377..1453786 (-) 1410 WP_102840829.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37037.47 Da        Isoelectric Point: 5.5400

>NTDB_id=548889 J4H94_RS06925 WP_102840827.1 1449588..1450631(+) (recA) [Stutzerimonas frequens strain TPA3]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKFLEDNPEIGREIEQ
QIRDKLLVVSGGSKANAVSEDLVDADL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=548889 J4H94_RS06925 WP_102840827.1 1449588..1450631(+) (recA) [Stutzerimonas frequens strain TPA3]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCAGCCCTGGGCCAGATTGAAAAGCAGTTCGGCAAGGGCGCAGTGATGCG
CATGGGCGATCATGATCGTCAGGCGATTCCGGCCATCTCCACAGGCTCGCTGGGCCTAGATATCGCGCTGGGCATTGGCG
GCCTGCCGAAGGGTCGAATCGTCGAGATCTATGGTCCCGAATCGTCCGGCAAGACCACCATGACCCTCTCTGTGATCGCC
GAGGCGCAGAAGATGGGTGCCACCTGCGCCTTTGTCGACGCCGAACACGCACTGGACCCGGACTACGCCGGCAAGCTGGG
CGTCAACGTGGACGACCTGCTGGTTTCGCAGCCGGATACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCGGTCGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAT
GCCCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAATTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGATATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTGGTGAAGAACAAGGTGGCCCCGCCGTTCCGCCAGGCCGAGTTCCAGATTCTCTATGGCAAGGGTAT
CTACCGCAACGGCGAGATCATCGACCTCGGCGTGCAGCAGGGGCTGGTGGAGAAGTCCGGTGCCTGGTACGCCTACAAGG
GCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCAAGTTCCTGGAAGACAATCCGGAGATCGGCCGCGAGATCGAGCAG
CAGATCCGCGACAAGCTGCTCGTGGTTTCCGGTGGCAGCAAGGCGAACGCGGTCAGCGAAGACCTGGTTGACGCCGACCT
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

94.524

100

0.945
  recA Acinetobacter baumannii D1279779

73.775

100

0.738
  recA Acinetobacter baylyi ADP1

77.134

94.524

0.729
  recA Vibrio cholerae strain A1552

74.312

94.236

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

94.236

0.7
  recA Ralstonia pseudosolanacearum GMI1000

72.866

94.524

0.689
  recA Glaesserella parasuis strain SC1401

73.457

93.372

0.686
  recA Neisseria gonorrhoeae MS11

71.296

93.372

0.666
  recA Neisseria gonorrhoeae MS11

71.296

93.372

0.666
  recA Neisseria gonorrhoeae strain FA1090

71.296

93.372

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594
  recA Helicobacter pylori strain NCTC11637

62.691

94.236

0.591
  recA Helicobacter pylori 26695

62.08

94.236

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Streptococcus mitis NCTC 12261

56.647

99.712

0.565
  recA Streptococcus mutans UA159

60

93.66

0.562
  recA Streptococcus mitis SK321

56.358

99.712

0.562
  recA Streptococcus pneumoniae D39

58.61

95.389

0.559
  recA Streptococcus pneumoniae TIGR4

58.61

95.389

0.559
  recA Streptococcus pneumoniae Rx1

58.61

95.389

0.559
  recA Streptococcus pneumoniae R6

58.61

95.389

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.507

0.553
  recA Streptococcus pyogenes NZ131

58.232

94.524

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.276

93.084

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

93.948

0.522