Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K0768_RS12270 Genome accession   NZ_CP089142
Coordinates   1859461..1860888 (-) Length   475 a.a.
NCBI ID   WP_153449107.1    Uniprot ID   -
Organism   Escherichia coli strain XD35     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1854461..1865888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0768_RS12240 (LS330_12240) yeeZ 1854516..1855340 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  K0768_RS12245 (LS330_12245) yeeY 1855386..1856315 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  K0768_RS12250 (LS330_12250) yoeI 1856530..1856592 (+) 63 WP_010723108.1 membrane protein YoeI -
  K0768_RS12255 (LS330_12255) plaP 1856582..1857940 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K0768_RS12260 (LS330_12260) tsuA 1858119..1859177 (+) 1059 WP_000492316.1 thiosulfate utilization transporter TsuA/YeeE -
  K0768_RS12265 (LS330_12265) tsuB 1859191..1859418 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K0768_RS12270 (LS330_12270) sbcB 1859461..1860888 (-) 1428 WP_153449107.1 exodeoxyribonuclease I Machinery gene
  K0768_RS12275 (LS330_12275) dacD 1861097..1862263 (+) 1167 WP_001375226.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K0768_RS12280 (LS330_12280) sbmC 1862382..1862855 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  K0768_RS12285 (LS330_12285) yeeA 1863054..1864112 (+) 1059 WP_001200891.1 FUSC family protein -
  K0768_RS12290 (LS330_12290) tmaR 1864284..1864613 (+) 330 WP_000450409.1 DUF496 family protein -
  K0768_RS12295 (LS330_12295) - 1864714..1864896 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K0768_RS12300 (LS330_12300) - 1864968..1865096 (+) 129 Protein_1759 transposase domain-containing protein -
  K0768_RS12305 (LS330_12305) - 1865385..1865477 (-) 93 Protein_1760 hypothetical protein -
  K0768_RS12310 (LS330_12310) yeeW 1865511..1865705 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54501.80 Da        Isoelectric Point: 5.3521

>NTDB_id=548844 K0768_RS12270 WP_153449107.1 1859461..1860888(-) (sbcB) [Escherichia coli strain XD35]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFTARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGIDRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=548844 K0768_RS12270 WP_153449107.1 1859461..1860888(-) (sbcB) [Escherichia coli strain XD35]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTACCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
TGATGACGAAGTCACACGCAATATCTTCTATCGCAACTTTTATGATCCTTATGCCTGGAGCTGGCAGCATGACAACTCAC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTGATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGCAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581