Detailed information NTG0548831

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: J4031_RS12595
• Genome accession: NZ_CP071890
• Coordinates: 3013209..3014609 (-)
• Length: 466 a.a.
• NCBI ID: WP_091859572.1
• Uniprot ID: -
• Organism: Xylanibacter ruminicola strain KHP1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3008209..3019609

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4031_RS12585 (J4031_12585)	-	3009677..3011608 (-)	1932	WP_091859584.1	glycoside hydrolase family 97 protein	-
J4031_RS12590 (J4031_12590)	-	3011778..3013049 (-)	1272	WP_091859578.1	phosphoglycerate kinase	-
J4031_RS12595 (J4031_12595)	radA	3013209..3014609 (-)	1401	WP_091859572.1	DNA repair protein RadA	Machinery gene
J4031_RS12600 (J4031_12600)	-	3014696..3015616 (+)	921	WP_091859569.1	ABC transporter substrate-binding protein	-
J4031_RS12605 (J4031_12605)	-	3015620..3017809 (+)	2190	WP_139294731.1	tetratricopeptide repeat protein	-
J4031_RS12610 (J4031_12610)	-	3017754..3018908 (-)	1155	WP_091859566.1	acyltransferase family protein	-

Sequence

Protein

• Length: 466 a.a.
• Molecular weight: 50579.15 Da
• Isoelectric Point: 6.7649

>NTDB_id=548831 J4031_RS12595 WP_091859572.1 3013209..3014609(-) (radA) [Xylanibacter ruminicola strain KHP1]
MAKDKIAYVCSNCGQESPKWIGKCPACGQWNTFKEIKVAPSSTPKTAAARGGLSAGTSAQSSALHAGKVLRLRDISSKDD
PRIDMHDAELNRVLGGGLVPGSIVLLGGEPGIGKSTLSLQTMLNMPEKKILYVSGEESAHQLKMRAERLGGENENFLLLT
ENSLETIFDHIKEVQPELIVIDSIQTISTEDVESSAGSIAQVRECASALLRFAKTSGVPVILIGHITKEGTLAGPKILEH
IVDTVIQFEGDQHYMYRILRSIKNRFGSTAELGIYEMLQNGLRQVSNPSELLLTQDRDGLSGIAITSAIEGIRPFLVETQ
ALVSTAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLAQKDVFVNIAGGLRVTDLAMDLSVIAAVLSSNVDTPIESGWC
MAGEVGLSGEVRPVNRIEQRIAEAEKLGFTDMIIPKYNLQGFDKNKYSIHLHPVRKVEEALRAIFG

Nucleotide

• Length: 1401 bp

>NTDB_id=548831 J4031_RS12595 WP_091859572.1 3013209..3014609(-) (radA) [Xylanibacter ruminicola strain KHP1]
ATGGCAAAAGATAAGATAGCATACGTTTGTTCCAACTGCGGACAGGAATCGCCTAAGTGGATTGGCAAGTGCCCTGCCTG
CGGACAATGGAACACGTTTAAGGAGATAAAAGTAGCTCCCAGTTCAACCCCTAAAACGGCTGCAGCAAGGGGCGGTTTAA
GCGCGGGCACATCAGCCCAGTCGTCGGCTTTGCATGCAGGTAAGGTGCTGCGATTGCGCGACATCAGCTCGAAGGACGAC
CCACGTATCGACATGCACGATGCCGAACTGAACCGTGTACTGGGTGGCGGATTGGTGCCTGGCAGTATCGTGCTGCTGGG
TGGCGAGCCTGGTATCGGCAAATCAACCCTTTCGCTACAAACGATGCTGAACATGCCCGAGAAGAAGATTCTATACGTGA
GCGGTGAGGAAAGCGCCCATCAGCTAAAGATGCGTGCAGAACGACTGGGTGGCGAAAACGAGAACTTCCTGCTACTTACA
GAGAACTCGCTCGAAACTATCTTCGACCATATTAAAGAGGTACAACCCGAACTGATTGTGATCGACTCGATACAAACCAT
TTCTACCGAGGATGTTGAGTCGAGTGCAGGCTCTATCGCACAGGTGCGCGAGTGCGCTTCAGCCCTACTCCGTTTTGCCA
AAACCAGCGGTGTGCCCGTAATCCTGATTGGTCACATCACCAAAGAGGGCACCTTGGCAGGTCCTAAAATTCTCGAGCAT
ATTGTGGATACAGTTATCCAGTTCGAAGGCGACCAGCACTATATGTACCGCATTCTGCGCAGCATCAAGAACCGCTTTGG
TTCTACAGCCGAACTGGGCATCTACGAGATGCTGCAGAACGGTTTGCGACAGGTATCGAACCCATCCGAACTGCTGCTCA
CACAGGATCGCGACGGCCTTTCGGGCATCGCCATCACATCGGCCATCGAGGGTATTCGTCCGTTCTTAGTCGAGACGCAG
GCCCTTGTTTCAACAGCCGCCTACGGCACCCCTCAGCGTTCGGCCACAGGCTTTGATCAGCGCCGACTGAACATGCTACT
GGCTGTGCTTGAAAAGCGCGTGGGCTTTAAGCTGGCACAGAAGGATGTGTTTGTGAATATTGCAGGCGGACTTCGTGTTA
CCGACTTGGCGATGGACCTGAGTGTGATTGCGGCTGTGCTCTCATCTAATGTTGATACACCTATCGAGTCAGGTTGGTGC
ATGGCAGGCGAGGTTGGACTGAGTGGCGAGGTGCGCCCTGTCAACCGTATCGAGCAGCGAATTGCCGAGGCCGAGAAGCT
CGGATTTACCGATATGATTATCCCCAAATACAACCTTCAGGGCTTCGATAAGAATAAATATTCAATCCATTTGCACCCTG
TAAGAAAGGTGGAAGAAGCCCTACGTGCAATCTTCGGATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (82-230)

• Subunit ChlI of Mg-chelatase (ChlI) (349-438)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.149	100	0.496
radA	Streptococcus mitis NCTC 12261	45.064	100	0.451
radA	Streptococcus pneumoniae Rx1	45.064	100	0.451
radA	Streptococcus pneumoniae D39	45.064	100	0.451
radA	Streptococcus pneumoniae R6	45.064	100	0.451
radA	Streptococcus pneumoniae TIGR4	45.064	100	0.451
radA	Streptococcus mitis SK321	44.85	100	0.449