Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LSP21_RS09040 Genome accession   NZ_CP089068
Coordinates   1966633..1966998 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain UNC_PaerCF13     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1961633..1971998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP21_RS09010 (LSP21_09020) pyrR 1962255..1962767 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  LSP21_RS09015 (LSP21_09025) ruvX 1962879..1963313 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  LSP21_RS09020 (LSP21_09030) - 1963313..1963882 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  LSP21_RS09025 (LSP21_09035) - 1963931..1964824 (-) 894 WP_003162015.1 energy transducer TonB -
  LSP21_RS09030 (LSP21_09040) gshB 1964971..1965924 (-) 954 WP_003100943.1 glutathione synthase -
  LSP21_RS09035 (LSP21_09045) pilG 1966179..1966586 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  LSP21_RS09040 (LSP21_09050) pilH 1966633..1966998 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  LSP21_RS09045 (LSP21_09055) - 1967049..1967585 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  LSP21_RS09050 (LSP21_09060) pilJ 1967670..1969717 (+) 2048 Protein_1778 chemotaxis chemoreceptor PilJ -
  LSP21_RS09055 (LSP21_09065) pilK 1969778..1970653 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=548758 LSP21_RS09040 WP_003084587.1 1966633..1966998(+) (pilH) [Pseudomonas aeruginosa strain UNC_PaerCF13]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=548758 LSP21_RS09040 WP_003084587.1 1966633..1966998(+) (pilH) [Pseudomonas aeruginosa strain UNC_PaerCF13]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364