Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LSP21_RS08855 Genome accession   NZ_CP089068
Coordinates   1934088..1935434 (+) Length   448 a.a.
NCBI ID   WP_003160919.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1929088..1940434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP21_RS08835 (LSP21_08845) - 1929925..1930491 (-) 567 WP_017001596.1 hypothetical protein -
  LSP21_RS08840 (LSP21_08850) rsmD 1930494..1931090 (-) 597 WP_003142626.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LSP21_RS08845 (LSP21_08855) - 1931090..1932577 (-) 1488 WP_017001595.1 pitrilysin family protein -
  LSP21_RS08850 (LSP21_08860) - 1932570..1933967 (-) 1398 WP_003084498.1 pitrilysin family protein -
  LSP21_RS08855 (LSP21_08865) pilA 1934088..1935434 (+) 1347 WP_003160919.1 signal recognition particle-docking protein FtsY Machinery gene
  LSP21_RS08860 (LSP21_08870) ftsE 1935431..1936102 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  LSP21_RS08865 (LSP21_08875) ftsX 1936102..1937109 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  LSP21_RS08870 (LSP21_08880) rpoH 1937223..1938077 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  LSP21_RS08875 (LSP21_08885) - 1938142..1938747 (+) 606 WP_003084511.1 hypothetical protein -
  LSP21_RS08880 (LSP21_08890) mtgA 1938752..1939483 (-) 732 WP_231800133.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LSP21_RS08885 (LSP21_08895) - 1939520..1939897 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  LSP21_RS08890 (LSP21_08900) thiS 1940000..1940200 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 47646.03 Da        Isoelectric Point: 4.6083

>NTDB_id=548754 LSP21_RS08855 WP_003160919.1 1934088..1935434(+) (pilA) [Pseudomonas aeruginosa strain UNC_PaerCF13]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEG
MASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAR
EPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA
KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGT
AKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=548754 LSP21_RS08855 WP_003160919.1 1934088..1935434(+) (pilA) [Pseudomonas aeruginosa strain UNC_PaerCF13]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCA
GCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGC
ATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGA
CGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCG
CGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGC
GAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCA
ACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCG
AGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCC
AAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAA
GAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGC
AGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACC
GCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGA
CGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(158-223)

SRP54-type protein, GTPase domain (SRP54)

(243-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.907

95.982

0.46