Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LSP16_RS26960 Genome accession   NZ_CP089067
Coordinates   5693307..5693636 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5688307..5698636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS26945 (LSP16_26860) uvrB 5689694..5691706 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  LSP16_RS26950 (LSP16_26865) - 5691894..5693090 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  LSP16_RS26960 (LSP16_26875) comEA/comE1 5693307..5693636 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  LSP16_RS26965 (LSP16_26880) - 5693827..5695825 (-) 1999 Protein_5337 polysaccharide biosynthesis protein -
  LSP16_RS26970 (LSP16_26885) - 5696390..5697497 (-) 1108 Protein_5338 IS3 family transposase -
  LSP16_RS26975 (LSP16_26890) - 5697575..5698592 (-) 1018 Protein_5339 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=548702 LSP16_RS26960 WP_003104586.1 5693307..5693636(-) (comEA/comE1) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=548702 LSP16_RS26960 WP_003104586.1 5693307..5693636(-) (comEA/comE1) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385