Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   J4I02_RS21380 Genome accession   NZ_CP071875
Coordinates   4561608..4562561 (-) Length   317 a.a.
NCBI ID   WP_274482786.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain SF05     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4556608..4567561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4I02_RS21355 (J4I02_21075) - 4557077..4557988 (-) 912 WP_274482782.1 aldo/keto reductase -
  J4I02_RS21360 (J4I02_21080) - 4558146..4558889 (-) 744 WP_274482783.1 alpha/beta hydrolase-fold protein -
  J4I02_RS21365 (J4I02_21085) - 4558923..4559903 (-) 981 WP_274482784.1 siderophore ABC transporter substrate-binding protein -
  J4I02_RS21370 (J4I02_21090) - 4559916..4560674 (-) 759 WP_039273792.1 ABC transporter ATP-binding protein -
  J4I02_RS21375 (J4I02_21095) - 4560668..4561618 (-) 951 WP_274482785.1 iron chelate uptake ABC transporter family permease subunit -
  J4I02_RS21380 (J4I02_21100) ceuB 4561608..4562561 (-) 954 WP_274482786.1 ABC transporter permease Machinery gene
  J4I02_RS21385 (J4I02_21105) - 4562892..4563569 (+) 678 WP_274485718.1 response regulator transcription factor -
  J4I02_RS21390 (J4I02_21110) - 4563571..4564488 (+) 918 WP_274482787.1 HAMP domain-containing sensor histidine kinase -
  J4I02_RS21395 (J4I02_21115) - 4564598..4565275 (+) 678 WP_274482788.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34774.80 Da        Isoelectric Point: 9.9012

>NTDB_id=548697 J4I02_RS21380 WP_274482786.1 4561608..4562561(-) (ceuB) [Paenibacillus polymyxa strain SF05]
MKLRYLILAFLVLAFASVFIGVHEITPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALAGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=548697 J4I02_RS21380 WP_274482786.1 4561608..4562561(-) (ceuB) [Paenibacillus polymyxa strain SF05]
ATGAAATTGCGCTATTTAATACTGGCCTTTCTCGTACTGGCCTTCGCCTCGGTGTTTATCGGTGTTCATGAGATAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTGCTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTTGTATCGCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGGTTTGCTCTAGCAGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCACTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCGAATTTGGGAG
TTCATTACAAGCGCACCGTCAATGTCGGGTTAGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACA
ATTCCCTTTTTGGGGCTGGTTGTACCTAATCTCGTCAGCATGTATATGGGGGATAATCTAAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTGGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.429

99.369

0.511