Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LSP16_RS02755 Genome accession   NZ_CP089067
Coordinates   549737..551071 (-) Length   444 a.a.
NCBI ID   WP_034052863.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 544737..556071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS02720 (LSP16_02670) thiS 544971..545171 (-) 201 WP_003084514.1 sulfur carrier protein ThiS -
  LSP16_RS02725 (LSP16_02675) - 545274..545651 (-) 378 WP_003084513.1 DUF423 domain-containing protein -
  LSP16_RS02730 (LSP16_02680) mtgA 545688..546419 (+) 732 WP_079386396.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LSP16_RS02735 (LSP16_02685) - 546424..547029 (-) 606 WP_003084511.1 hypothetical protein -
  LSP16_RS02740 (LSP16_02690) rpoH 547094..547948 (-) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  LSP16_RS02745 (LSP16_02695) ftsX 548062..549069 (-) 1008 WP_219832744.1 permease-like cell division protein FtsX -
  LSP16_RS02750 (LSP16_02700) ftsE 549069..549740 (-) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  LSP16_RS02755 (LSP16_02705) pilA 549737..551071 (-) 1335 WP_034052863.1 signal recognition particle-docking protein FtsY Machinery gene
  LSP16_RS02760 (LSP16_02710) - 551192..552589 (+) 1398 WP_079386395.1 pitrilysin family protein -
  LSP16_RS02765 (LSP16_02715) - 552582..554069 (+) 1488 WP_003459246.1 pitrilysin family protein -
  LSP16_RS02770 (LSP16_02720) rsmD 554069..554665 (+) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LSP16_RS02775 (LSP16_02725) - 554668..555234 (+) 567 WP_219832745.1 hypothetical protein -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 47197.56 Da        Isoelectric Point: 4.6728

>NTDB_id=548622 LSP16_RS02755 WP_034052863.1 549737..551071(-) (pilA) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAETEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGMASL
FLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYV
ILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKARG
IDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGG
VIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=548622 LSP16_RS02755 WP_034052863.1 549737..551071(-) (pilA) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGTTTGGTTCCAACGATGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAAACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAACCTATCCTGGCTGCCGAGACCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGA
CCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTG
TTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGA
GGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGG
CGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTG
ATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAA
GAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCA
TCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGC
ATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCG
GGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCA
ACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTTGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGG
GTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTAC
CTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(154-219)

SRP54-type protein, GTPase domain (SRP54)

(239-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.592

95.946

0.466