Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LSP20_RS24765 Genome accession   NZ_CP089065
Coordinates   5333836..5334165 (-) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain UNC_PaerCF34     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5328836..5339165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP20_RS24750 (LSP20_24760) uvrB 5330223..5332235 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  LSP20_RS24755 (LSP20_24765) - 5332423..5333619 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  LSP20_RS24765 (LSP20_24775) comEA/comE1 5333836..5334165 (-) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  LSP20_RS24770 (LSP20_24780) - 5334356..5336353 (-) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  LSP20_RS24775 (LSP20_24785) - 5336551..5337588 (-) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  LSP20_RS24780 (LSP20_24790) - 5337588..5338550 (-) 963 WP_033862945.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=548598 LSP20_RS24765 WP_003138486.1 5333836..5334165(-) (comEA/comE1) [Pseudomonas aeruginosa strain UNC_PaerCF34]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=548598 LSP20_RS24765 WP_003138486.1 5333836..5334165(-) (comEA/comE1) [Pseudomonas aeruginosa strain UNC_PaerCF34]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385