Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   LSP20_RS23805 Genome accession   NZ_CP089065
Coordinates   5125995..5126351 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain UNC_PaerCF34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5120995..5131351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP20_RS23780 (LSP20_23790) - 5121378..5122010 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  LSP20_RS23785 (LSP20_23795) - 5122075..5122971 (-) 897 WP_023517787.1 radical SAM protein -
  LSP20_RS23790 (LSP20_23800) - 5123121..5123759 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  LSP20_RS23795 (LSP20_23805) - 5123845..5124978 (+) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  LSP20_RS23800 (LSP20_23810) - 5125204..5125980 (-) 777 WP_003091117.1 TatD family hydrolase -
  LSP20_RS23805 (LSP20_23815) pilZ 5125995..5126351 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  LSP20_RS23810 (LSP20_23820) - 5126385..5127371 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  LSP20_RS23815 (LSP20_23825) tmk 5127364..5127996 (-) 633 WP_023517788.1 dTMP kinase -
  LSP20_RS23820 (LSP20_23830) mltG 5128025..5129074 (-) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  LSP20_RS23825 (LSP20_23835) pabC 5129080..5129895 (-) 816 WP_003110198.1 aminodeoxychorismate lyase -
  LSP20_RS23830 (LSP20_23840) fabF 5129895..5131139 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=548590 LSP20_RS23805 WP_003091119.1 5125995..5126351(-) (pilZ) [Pseudomonas aeruginosa strain UNC_PaerCF34]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=548590 LSP20_RS23805 WP_003091119.1 5125995..5126351(-) (pilZ) [Pseudomonas aeruginosa strain UNC_PaerCF34]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449