Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J3359_RS12290 Genome accession   NZ_CP071869
Coordinates   2725289..2726650 (-) Length   453 a.a.
NCBI ID   WP_208077151.1    Uniprot ID   A0A975CPR1
Organism   Polaribacter cellanae strain SM13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2720289..2731650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3359_RS12260 (J3359_12260) - 2720671..2721132 (-) 462 WP_208077145.1 DUF4296 domain-containing protein -
  J3359_RS12265 (J3359_12265) - 2721135..2722475 (-) 1341 WP_208077146.1 dihydroorotase -
  J3359_RS12270 (J3359_12270) - 2722484..2722948 (-) 465 WP_208077147.1 GNAT family N-acetyltransferase -
  J3359_RS12275 (J3359_12275) - 2722951..2723673 (-) 723 WP_208077148.1 polyprenol monophosphomannose synthase -
  J3359_RS12280 (J3359_12280) - 2723754..2724395 (+) 642 WP_208077149.1 DUF4271 domain-containing protein -
  J3359_RS12285 (J3359_12285) - 2724413..2725159 (+) 747 WP_208077150.1 uroporphyrinogen-III synthase -
  J3359_RS12290 (J3359_12290) radA 2725289..2726650 (-) 1362 WP_208077151.1 DNA repair protein RadA Machinery gene
  J3359_RS12295 (J3359_12295) - 2726742..2726945 (-) 204 WP_208077152.1 hypothetical protein -
  J3359_RS18450 - 2727191..2727313 (-) 123 WP_302850184.1 hypothetical protein -
  J3359_RS12300 (J3359_12300) - 2727517..2728479 (-) 963 WP_208077153.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  J3359_RS12305 (J3359_12305) panD 2728482..2728832 (-) 351 WP_088352642.1 aspartate 1-decarboxylase -
  J3359_RS12310 (J3359_12310) panC 2728912..2729760 (-) 849 WP_208077154.1 pantoate--beta-alanine ligase -
  J3359_RS12315 (J3359_12315) - 2729859..2730668 (+) 810 WP_208077155.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49615.09 Da        Isoelectric Point: 7.6992

>NTDB_id=548581 J3359_RS12290 WP_208077151.1 2725289..2726650(-) (radA) [Polaribacter cellanae strain SM13]
MAKTKTTFFCQNCGTQHAKWVGQCGACKEWNTIVEEIIQKEEKRVWKQSTTAKQTINKPLKIADIQLNPEERVVTNNNEL
DTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALNISQKVLYVSGEESQSQIKMRAERLDAKNSNCLILTETNTQQIFKNI
EETEPEVLVIDSIQTLHTHNIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGNIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTSELGIYEMLSNGLREISNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTP
QRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNQDIAINPNVCFAAEVGLAGEI
RPVSKINQRILEAEKLGYKTFVASKYNKISSKNHGIRLVLVGKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=548581 J3359_RS12290 WP_208077151.1 2725289..2726650(-) (radA) [Polaribacter cellanae strain SM13]
ATGGCCAAAACCAAAACAACTTTTTTCTGTCAGAATTGTGGAACGCAACACGCAAAATGGGTTGGGCAATGTGGCGCTTG
TAAAGAATGGAATACCATTGTAGAAGAAATTATCCAAAAAGAAGAAAAACGCGTTTGGAAACAATCTACAACTGCAAAAC
AAACTATAAATAAACCTTTAAAAATTGCTGATATTCAGCTAAATCCAGAAGAAAGAGTTGTTACAAACAACAACGAATTA
GACACAGTTTTAGGTGGTGGTTTGGTAAAAGGTTCTGTAACGCTTTTAGGTGGAGAACCAGGAATTGGAAAATCGACCTT
ATTATTGCAAGTTGCCTTGAATATCAGTCAGAAAGTGCTGTATGTTTCTGGTGAAGAAAGCCAATCTCAAATAAAAATGA
GAGCCGAAAGATTGGATGCAAAAAATTCTAATTGTTTAATTCTTACAGAAACAAATACACAGCAAATCTTCAAAAATATT
GAAGAAACCGAACCCGAAGTTTTAGTAATCGATTCTATACAAACTTTACACACCCATAATATTGAAGCTTCTCCAGGAAG
TATTTCTCAAATTAGAGAAACTTCTGCAGAACTCATAAAATTCGCCAAGGAAACTGCCACTCCTGTTTTATTAATTGGAC
ATATAAACAAAGAAGGAAATATTGCTGGCCCAAAAATTTTAGAACACATGGTAGATGTTGTTTTACAATTTGAAGGCGAT
AGAAACCATACCTATAGAATTTTAAGAAGTCAAAAAAACAGATTTGGTTCTACCTCTGAATTAGGGATTTACGAAATGCT
CTCTAACGGATTAAGAGAAATTTCTAATCCATCTGAAATTTTAATTTCTAAAAAGGACGCCGATTTAAGTGGAACAGCCA
TTGCAAGTACTTTAGAAGGAATTAGACCTTTAATGATTGAAATTCAGGCACTAGTTTCTACAGCAGTTTATGGAACTCCA
CAACGTTCTACAACAGGTTATAATTTAAAACGTTTGCATATGATTTTGGCTGTTTTAGAAAAAAGAGCTGGTTTTAAATT
GGGCGCAAAAGATGTTTTTTTAAATATTACTGGAGGCATAAATGTAGACGATCCTGCAATAGATTTGGCAGTGGTTGCAG
CCATTTTATCTTCTAACCAAGACATTGCAATTAACCCTAATGTATGTTTCGCAGCAGAAGTTGGTTTGGCTGGAGAAATA
AGACCAGTTTCAAAAATTAACCAGCGAATTTTAGAAGCAGAAAAATTGGGTTACAAAACCTTTGTGGCTTCTAAATACAA
TAAAATTTCTTCTAAAAACCATGGAATAAGATTGGTTTTGGTTGGTAAAATTGAGGAAGCTTTTGCTACTTTGTTTGCCT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(73-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.899

100

0.49
  radA Streptococcus mitis NCTC 12261

47.807

100

0.481
  radA Streptococcus pneumoniae Rx1

47.807

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.481
  radA Streptococcus pneumoniae D39

47.807

100

0.481
  radA Streptococcus pneumoniae R6

47.807

100

0.481
  radA Streptococcus mitis SK321

47.484

100

0.479