Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   LSP20_RS06180 Genome accession   NZ_CP089065
Coordinates   1317993..1318517 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain UNC_PaerCF34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312993..1323517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP20_RS06160 (LSP20_06160) - 1313060..1315531 (-) 2472 WP_023518163.1 penicillin-binding protein 1A -
  LSP20_RS06165 (LSP20_06165) pilM 1315716..1316780 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  LSP20_RS06170 (LSP20_06170) pilN 1316780..1317376 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LSP20_RS06175 (LSP20_06175) pilO 1317373..1317996 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSP20_RS06180 (LSP20_06180) comL/pilP 1317993..1318517 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LSP20_RS06185 (LSP20_06185) pilQ 1318571..1320715 (+) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  LSP20_RS06190 (LSP20_06190) aroK 1320727..1321245 (+) 519 WP_003095833.1 shikimate kinase AroK -
  LSP20_RS06195 (LSP20_06195) aroB 1321295..1322401 (+) 1107 WP_003112148.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=548542 LSP20_RS06180 WP_003095836.1 1317993..1318517(+) (comL/pilP) [Pseudomonas aeruginosa strain UNC_PaerCF34]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=548542 LSP20_RS06180 WP_003095836.1 1317993..1318517(+) (comL/pilP) [Pseudomonas aeruginosa strain UNC_PaerCF34]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362