Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   J4N42_RS17820 Genome accession   NZ_CP071860
Coordinates   779646..780848 (-) Length   400 a.a.
NCBI ID   WP_252034200.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 774646..785848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS17800 (J4N42_17775) - 774795..775994 (-) 1200 WP_252033965.1 outer membrane protein transport protein -
  J4N42_RS17805 (J4N42_17780) - 775984..778122 (-) 2139 WP_252033966.1 Ig-like domain-containing protein -
  J4N42_RS17810 (J4N42_17785) - 778429..779070 (+) 642 WP_252033968.1 winged helix-turn-helix domain-containing protein -
  J4N42_RS17815 (J4N42_17790) - 779063..779545 (+) 483 WP_252033970.1 hypothetical protein -
  J4N42_RS17820 (J4N42_17795) cqsA 779646..780848 (-) 1203 WP_252034200.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J4N42_RS17825 (J4N42_17800) - 781149..782099 (-) 951 WP_252033972.1 TDT family transporter -
  J4N42_RS17830 (J4N42_17805) clcA 782490..783893 (-) 1404 WP_252033974.1 H(+)/Cl(-) exchange transporter ClcA -
  J4N42_RS17835 (J4N42_17810) - 784381..785367 (+) 987 WP_252033976.1 GTP-binding protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44154.14 Da        Isoelectric Point: 6.8517

>NTDB_id=548526 J4N42_RS17820 WP_252034200.1 779646..780848(-) (cqsA) [Vibrio sp. SCSIO 43135]
MHTPIRLPEFVDTRLNFFIDSLLDTKDTGRNLVLGLAPQETDINLQSNDYLNLSYHPDIINAQIRSLASKKGTPFMSNVF
LQADGLDKQVEQQLARFVGFDSCIVSASGWTANVGLLQTICDSSTNVYIDFFAHMSLWEGARIAGANIHPFMHNNVRHLK
KLISRNGPGIVLIDSVYSTLGTIARLEEIIATCNELNCAIVVDESHSLGTHGPSGAGLLQEHGLTKQVDFLTASLAKTFA
YRAGAIWCNNRFGDCLPYVAFPSIFSSAVMTHELERIEATLKVIRGSDLARNKLHQNSKRIRNALRDIGFGIRSETQIIA
LETGGNTETRIVRDYLESHGVFGSVFCPPATPNNKNVIRLSIDSQLTDGQIDHLINVCSDAYDKYFSHQVSFAAKPKQAS

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=548526 J4N42_RS17820 WP_252034200.1 779646..780848(-) (cqsA) [Vibrio sp. SCSIO 43135]
TTGCATACTCCTATCCGCTTACCGGAATTTGTTGATACGCGCCTTAATTTCTTTATTGATTCTCTGCTAGACACTAAAGA
CACAGGTCGTAACTTAGTCCTAGGCTTAGCACCCCAAGAAACGGATATTAACCTTCAAAGCAACGACTATCTTAATTTGT
CGTACCACCCAGACATAATAAACGCTCAGATCCGATCATTAGCGTCTAAAAAAGGTACACCTTTTATGTCTAATGTGTTT
CTTCAAGCCGATGGGCTCGACAAGCAAGTTGAACAACAATTAGCTCGATTTGTTGGTTTCGATTCTTGTATCGTCAGTGC
ATCCGGTTGGACTGCCAACGTAGGATTGCTCCAAACTATCTGCGACAGCAGCACCAACGTTTATATCGACTTCTTCGCTC
ACATGTCATTGTGGGAAGGCGCTCGAATCGCTGGTGCCAACATCCACCCGTTTATGCACAACAACGTTCGCCACTTGAAA
AAGTTGATAAGCCGTAACGGTCCGGGCATTGTGCTGATAGATTCGGTCTACAGCACCCTCGGTACCATCGCTCGCTTAGA
AGAGATTATTGCGACTTGTAACGAACTCAACTGCGCAATTGTTGTAGACGAATCCCACTCGCTCGGCACCCACGGTCCTT
CTGGGGCTGGCTTGTTGCAAGAACATGGATTAACAAAACAAGTGGACTTTCTAACCGCAAGCTTGGCCAAAACCTTTGCC
TACCGAGCTGGTGCCATTTGGTGTAATAATCGATTTGGCGATTGCTTACCCTATGTCGCGTTCCCATCTATATTTAGCTC
AGCAGTCATGACACATGAGTTAGAGCGAATTGAAGCAACGTTAAAAGTGATACGTGGCAGTGATCTTGCGAGAAATAAGC
TTCATCAGAACTCGAAACGAATTCGGAACGCTCTCAGAGACATCGGATTCGGTATTCGCAGTGAAACACAAATCATAGCG
TTAGAGACTGGTGGAAATACAGAAACTCGGATAGTGAGGGATTATTTAGAAAGCCATGGGGTGTTTGGTTCGGTATTTTG
TCCACCAGCAACACCTAATAATAAGAACGTAATTAGATTATCGATTGATAGCCAATTAACCGACGGACAAATTGATCATT
TAATTAATGTTTGTAGTGATGCGTACGATAAATATTTCTCGCATCAGGTTTCCTTCGCCGCCAAACCCAAACAAGCCAGT
TAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.784

97.25

0.542