Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   J4N42_RS17795 Genome accession   NZ_CP071860
Coordinates   772682..774721 (+) Length   679 a.a.
NCBI ID   WP_252033963.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 767682..779721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS17785 (J4N42_17760) - 768332..769465 (+) 1134 WP_252033959.1 exonuclease SbcCD subunit D -
  J4N42_RS17790 (J4N42_17765) - 769476..772532 (+) 3057 WP_252033961.1 SMC family ATPase -
  J4N42_RS17795 (J4N42_17770) cqsS 772682..774721 (+) 2040 WP_252033963.1 hybrid sensor histidine kinase/response regulator Regulator
  J4N42_RS17800 (J4N42_17775) - 774795..775994 (-) 1200 WP_252033965.1 outer membrane protein transport protein -
  J4N42_RS17805 (J4N42_17780) - 775984..778122 (-) 2139 WP_252033966.1 Ig-like domain-containing protein -
  J4N42_RS17810 (J4N42_17785) - 778429..779070 (+) 642 WP_252033968.1 winged helix-turn-helix domain-containing protein -
  J4N42_RS17815 (J4N42_17790) - 779063..779545 (+) 483 WP_252033970.1 hypothetical protein -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 77743.81 Da        Isoelectric Point: 4.7390

>NTDB_id=548525 J4N42_RS17795 WP_252033963.1 772682..774721(+) (cqsS) [Vibrio sp. SCSIO 43135]
MDVVKKIYHYAEPNLTLVGWMGFVGFPVYYYIWAFMFPQPYESMLLRGFCAVVLLVLALRDYIPSYLQKYLPYYYVATIT
FCLPFFFMFMLLMNDWSTVWVMSLMACIFLHVLLVHESKVLFLQTILSIIAAALTTWTIKGEITYNMVMWPYIPIFLFTY
VFGNLFYFRNQAEHESKVSIAKAFGAGIAHEMRNPLSALKTSVDVIQSTLPNGHDRSSDSYTISAKDLEVVTELLEGADE
VIRNGNEAIDLLLTSIDKNRVSNSTFTRHSIQQVIEDTLNSYPYKSKSAKNVVSLKVVDNFEYFGSDLLLKYSLYNLMKN
AFYYQNDSDFQITITLYEDEWHNRLVFKDNGIGIDEDSLDQIFNDFYTHGKNGSYGLGLPFCKKVMNSFGGNIECRSELE
QWTEFTLTFPKYQSREVQSIKLDLMSARSVLYMGESKPIIRKFNEHAFYQGFTFKAISPEQALGLEEYEFEYDLLLLDLD
SFNDNAFSVMESKLGFTVGKLAYLYDENKHYSGNWNRFLEIYPTSKQNVLEDVGKVLDGLIFDAHHAHRGDIPSREVSYN
KTILLADDNVSLRSLTSILLSKQGYHVVEVSDGAEAIDTLENSDIDLVILDIDMPVKDGYTAATDIRNSSKSFASIPIIG
HTGDSSPESIEKMHLVGMNDYLIKPVSKDNLLETLENYL

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=548525 J4N42_RS17795 WP_252033963.1 772682..774721(+) (cqsS) [Vibrio sp. SCSIO 43135]
ATGGATGTAGTAAAGAAAATCTATCATTATGCGGAGCCTAACCTTACGTTAGTAGGGTGGATGGGCTTTGTAGGCTTCCC
TGTATACTACTACATCTGGGCGTTCATGTTTCCACAGCCCTATGAGTCTATGTTGCTTCGTGGCTTTTGCGCGGTTGTTC
TTCTCGTACTAGCGCTGCGTGACTATATTCCCAGTTACCTACAAAAATACCTACCGTATTATTACGTTGCTACCATAACG
TTCTGCTTGCCATTTTTCTTCATGTTTATGCTTCTGATGAATGATTGGTCAACAGTGTGGGTTATGTCCTTGATGGCGTG
TATCTTTCTACATGTGCTGTTAGTGCATGAAAGTAAAGTGCTGTTTTTACAGACGATCCTTTCCATTATTGCTGCTGCAC
TGACTACATGGACGATAAAAGGTGAAATTACCTACAACATGGTCATGTGGCCATATATTCCAATCTTCTTGTTTACCTAT
GTATTTGGTAATTTGTTCTATTTCCGTAATCAAGCGGAACACGAATCGAAGGTATCGATAGCCAAAGCCTTTGGTGCTGG
TATCGCGCACGAAATGCGTAACCCTCTCAGTGCATTAAAAACGTCTGTCGATGTAATCCAAAGTACGTTGCCGAATGGGC
ATGACAGAAGCTCGGATAGCTATACGATTTCAGCAAAAGATCTCGAAGTCGTGACGGAGTTGCTAGAGGGTGCTGATGAA
GTGATTAGAAACGGCAACGAAGCGATCGATTTATTGTTGACGTCTATCGACAAAAATCGAGTGTCCAACTCTACGTTTAC
ACGTCATTCAATTCAGCAAGTGATTGAAGACACTCTAAACAGTTACCCGTATAAAAGTAAATCCGCTAAAAATGTCGTGT
CGTTAAAGGTTGTTGATAACTTTGAATATTTTGGTAGTGATTTATTGTTGAAGTATTCTTTATACAACTTAATGAAGAAC
GCATTTTATTATCAAAATGACAGTGACTTTCAAATCACCATTACATTGTATGAAGATGAATGGCACAACAGGTTAGTATT
CAAAGATAATGGTATCGGCATCGACGAAGACAGCCTAGACCAAATATTCAATGATTTTTATACTCATGGTAAGAATGGTA
GTTACGGCCTTGGCCTACCGTTTTGTAAAAAGGTGATGAACTCTTTTGGCGGTAACATTGAATGTCGTTCGGAGCTCGAA
CAGTGGACGGAGTTTACGTTGACCTTTCCTAAGTACCAATCACGTGAAGTGCAATCAATTAAGTTGGATCTAATGAGTGC
GCGTAGCGTCCTGTATATGGGAGAGTCGAAACCAATTATCCGCAAGTTTAATGAGCATGCTTTCTATCAAGGCTTCACGT
TTAAAGCGATTTCGCCCGAGCAAGCGTTAGGGTTGGAAGAGTACGAGTTTGAGTATGACTTGTTGTTACTAGATTTGGAT
AGCTTCAATGACAACGCTTTTTCAGTGATGGAATCTAAACTTGGCTTTACCGTTGGTAAACTTGCCTACCTGTATGATGA
AAACAAGCATTACTCTGGAAATTGGAACCGATTCCTGGAGATCTATCCTACCTCAAAACAGAATGTGCTTGAGGACGTAG
GTAAAGTCCTAGACGGTTTGATTTTCGATGCCCACCATGCCCATCGTGGAGATATCCCTTCCCGAGAAGTGAGCTACAAC
AAAACCATCTTACTTGCAGACGACAACGTTTCTCTGCGCAGTTTGACTTCCATCTTGCTATCTAAACAAGGCTATCACGT
TGTGGAAGTGTCTGATGGGGCAGAGGCGATTGATACGCTCGAGAACAGCGATATCGACTTAGTGATCTTAGATATTGATA
TGCCAGTAAAGGATGGTTATACCGCAGCCACTGATATTCGTAATTCAAGTAAAAGTTTTGCCTCGATTCCAATCATTGGT
CACACCGGGGACAGTTCACCGGAAAGCATTGAAAAGATGCACCTTGTTGGAATGAACGACTACCTGATCAAGCCAGTCAG
TAAAGATAATTTGCTGGAAACGTTAGAGAATTATTTATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(563-675)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(310-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.902

100

0.492