Detailed information NTG0548511

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: J4N42_RS11700
• Genome accession: NZ_CP071859
• Coordinates: 2629913..2633299 (+)
• Length: 1128 a.a.
• NCBI ID: WP_252028155.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43135
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2624913..2638299

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N42_RS11680 (J4N42_11670)	erpA	2625356..2625697 (-)	342	WP_252028147.1	iron-sulfur cluster insertion protein ErpA	-
J4N42_RS11685 (J4N42_11675)	hemL	2625978..2627270 (+)	1293	WP_252028149.1	glutamate-1-semialdehyde 2,1-aminomutase	-
J4N42_RS11690 (J4N42_11680)	-	2627521..2628606 (+)	1086	WP_252028151.1	AI-2E family transporter	-
J4N42_RS11695 (J4N42_11685)	rsmC	2628696..2629721 (+)	1026	WP_252028153.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
J4N42_RS11700 (J4N42_11690)	chiS	2629913..2633299 (+)	3387	WP_252028155.1	response regulator	Regulator
J4N42_RS11705 (J4N42_11695)	-	2634067..2635740 (+)	1674	WP_252028157.1	ABC transporter substrate-binding protein	-
J4N42_RS11710 (J4N42_11700)	-	2635908..2636894 (+)	987	WP_252028159.1	ABC transporter permease	-
J4N42_RS11715 (J4N42_11705)	-	2636897..2637922 (+)	1026	WP_252028160.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127171.83 Da
• Isoelectric Point: 6.0955

>NTDB_id=548511 J4N42_RS11700 WP_252028155.1 2629913..2633299(+) (chiS) [Vibrio sp. SCSIO 43135]
MFKFYRKQRFKRLQNTLMLAFLALSITPLTIVALFFLNSHSKDLQEQSTSHLISVRDTKQQQVIDYLYSKESEVMGFVRS
ELAYASGGRFYGLVNAFQNLGLDIEQARSNAQQRYILGSGDQIKTSILPQSKVYTGSERYRLLHKRYHWAYLELLKRSDF
DDILLVDITGNVTYSIYKHDYYGTNLVSGKYKDENLGKTFQQLKQLVTEKRRTNEEFTPVIISDFSESNGKQVAWLGAPI
IQQGYLHSYALFRLPNNGITKLIADTNAKSGMRTLLVGKDHITRSMAFKQEDIDKSTEVIDLALQGLSSVGTYTNTLGEK
TIAAYSPISLKGVNWAIVVEVPESEAFARVHSLEKLFVIAMLAAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
NVINTERKDEIGRLAVSFERMQRSIREKMQLIKSQNEELESNIHLIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALVSGANGPITSDHKYQLDIIISSGQRLATLVDDLLDYHKMRYGSLDIQTSAVDVSTATRLVLELSNHLLGNKPIRI
INQVPDESIWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISTTIVDEKLRVQVVDTGQGIPADQLEHIFEPLIQAGSDSS
RYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLPLASEAEVNEASLHEPSHFQAPDSSEIELPSQGSLPENPQ
GPLLLVADDEPVNLRVLDSFLRLEGYRVRTAKDGYEALELVEKEKPELLLLDIMMPGMSGYSVCEKLREQYDHASLPIIM
LTALNQTDDRIRGFDAGANDYLSKPFNKHELAARIVAHLTASKAEQRRIENDQLQLELKHRAMVEASLLETQGRLLEQLE
SAPEAIICVRDDHKVKFANDAASKLFKRSHEQLKRSSAEELIAPKYLTVEQEHYCGDIDIYVEDIRQHISTDILKLPEAS
GLKAMYIFNVGGSVNAARINNLETAIEALSSYAFEGDKGKLQQLKELGGEFTRIADKATDENKSKQDIMREVLVDAMTSA
ISYWERTTGQSKFNFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLSSLEYILEHCQEQSPERSHIIALRD
KLQHLLTT

Nucleotide

• Length: 3387 bp

>NTDB_id=548511 J4N42_RS11700 WP_252028155.1 2629913..2633299(+) (chiS) [Vibrio sp. SCSIO 43135]
ATGTTCAAGTTTTATCGTAAACAAAGATTTAAACGCCTACAAAATACTCTCATGTTGGCGTTTCTTGCATTGAGCATCAC
CCCTCTCACGATCGTCGCACTGTTTTTCCTAAACTCTCACAGTAAAGATTTGCAGGAACAGAGTACTTCTCACCTGATAT
CTGTAAGGGATACCAAGCAGCAACAGGTCATCGATTACTTATACTCCAAAGAGTCTGAAGTGATGGGCTTTGTTCGCTCG
GAGCTGGCGTATGCGAGTGGTGGCCGATTTTATGGCTTAGTCAACGCGTTCCAAAATTTAGGTTTAGACATCGAACAGGC
TCGTTCCAACGCGCAACAGCGCTACATTCTTGGATCAGGCGACCAGATTAAAACGTCAATTTTGCCGCAATCTAAAGTGT
ACACGGGCAGTGAACGTTACCGTCTATTGCACAAGCGTTACCACTGGGCCTATTTAGAGTTACTTAAACGTTCCGATTTT
GACGATATCTTATTGGTCGACATCACGGGTAACGTCACCTACTCCATCTACAAACACGATTACTACGGTACCAACCTCGT
TTCGGGTAAATACAAAGACGAGAACCTAGGCAAAACCTTTCAGCAGCTCAAACAACTGGTCACGGAGAAGCGCCGGACTA
ATGAAGAATTTACTCCTGTCATTATCTCCGACTTTTCAGAATCAAATGGTAAGCAGGTCGCATGGCTAGGCGCACCTATT
ATTCAACAAGGCTACCTACACAGTTACGCTCTTTTCCGTTTACCTAACAATGGCATTACTAAACTAATAGCCGATACCAA
CGCTAAATCAGGCATGAGAACACTGCTAGTTGGTAAAGATCACATCACACGTTCGATGGCCTTTAAACAAGAAGATATCG
ATAAAAGTACTGAAGTTATCGATTTAGCTCTGCAAGGACTCTCGTCGGTAGGTACTTACACCAATACGCTCGGTGAAAAA
ACCATCGCGGCTTATAGCCCAATCTCTCTCAAAGGAGTGAATTGGGCAATAGTAGTAGAAGTGCCCGAAAGTGAAGCTTT
TGCACGCGTGCACAGCTTAGAGAAACTGTTCGTGATAGCAATGCTCGCGGCTATTATCTTAGTAGTAATCGCTTCACACT
ATCTCTCGAATTTCATTACCTCCCCTCTACTCAAATTAACTTGGGCAGCGGAGAAAGTATCGGCAGGTGACCTCGATGAA
AACGTCATCAATACAGAGCGAAAAGATGAGATAGGCCGCCTAGCGGTGAGCTTCGAAAGAATGCAGCGCTCGATTCGCGA
AAAAATGCAGCTCATTAAATCGCAGAATGAGGAGCTTGAAAGTAATATCCATCTCATCCAGAAGCAAAATGATGAGTTGC
AACTTGCCAATAAACTAAAAGATGAATTCCTAGCCACAACATCTCACGAGCTAAGAACGCCATTACATGGCATGGTTGGT
ATCGCAGAGGCTCTGGTTTCAGGTGCTAACGGACCAATCACTTCCGATCATAAATACCAACTAGATATCATTATTAGTAG
CGGCCAACGCCTAGCAACACTGGTTGATGACCTACTCGATTACCACAAAATGCGCTATGGCAGCTTAGACATTCAAACCA
GTGCAGTTGATGTTTCTACTGCTACTCGATTAGTACTAGAACTGTCAAATCACCTGTTGGGCAACAAACCAATCAGAATC
ATTAACCAAGTTCCAGACGAAAGTATTTGGGTTTCAGCAGACCCTCAACGTTTGGAACAGGTGCTTTATAACCTCATCGG
CAATGCGATTAAGTACACTTCTGAAGGTAAGATTGTTATCTCCACCACTATCGTCGATGAAAAACTACGTGTACAAGTGG
TTGATACCGGACAAGGCATCCCAGCCGACCAACTAGAACACATTTTCGAACCACTCATTCAAGCGGGAAGCGACTCAAGT
CGATATCGCCAAGGTGCTGGACTCGGTTTATCTATCAGTCGCCAGCTGATTGAACTTATGCAAGGTTCACTCTATGTCAG
CAGCCAGCCGATGGTTGGTACGACCTTCAGCTTCACCTTGCCTCTGGCTTCCGAAGCGGAAGTTAATGAGGCTAGCCTAC
ATGAACCTTCACACTTCCAAGCGCCAGATTCATCTGAAATAGAACTACCTAGCCAAGGTTCGCTCCCTGAAAACCCACAA
GGCCCATTACTGCTTGTCGCAGACGACGAGCCAGTTAACTTAAGGGTACTCGATAGCTTCTTACGTTTAGAAGGCTACCG
CGTCAGGACAGCAAAAGACGGTTACGAAGCGCTTGAGTTGGTCGAGAAAGAAAAACCAGAACTGCTGCTGTTAGATATTA
TGATGCCTGGCATGAGCGGTTATAGCGTATGTGAGAAACTGCGCGAACAGTATGATCATGCAAGTCTGCCGATCATCATG
CTAACAGCGCTAAATCAAACTGATGACCGGATTCGAGGTTTTGATGCCGGAGCCAATGACTATTTATCTAAACCATTTAA
CAAGCATGAACTTGCGGCTCGAATCGTCGCGCACTTAACAGCAAGTAAAGCCGAGCAAAGGCGTATCGAAAACGACCAAC
TACAGTTGGAGCTAAAACATCGAGCCATGGTCGAAGCAAGCTTACTCGAGACACAGGGAAGGCTGCTGGAACAACTAGAA
TCAGCACCTGAGGCCATTATCTGTGTTCGAGACGACCATAAGGTTAAGTTTGCTAATGATGCAGCCTCTAAGCTGTTTAA
ACGTAGCCATGAACAGCTTAAGCGCTCAAGTGCAGAAGAGCTTATTGCACCCAAATACCTTACCGTCGAACAAGAGCATT
ACTGTGGTGATATCGATATCTATGTAGAAGACATTCGCCAACATATCTCGACCGATATTCTAAAGCTGCCAGAAGCTTCA
GGACTGAAAGCTATGTATATCTTCAACGTTGGTGGGAGCGTTAATGCGGCACGCATTAATAATCTAGAAACCGCGATTGA
AGCGCTCTCTAGCTACGCATTTGAAGGAGATAAAGGGAAACTGCAGCAGCTAAAAGAGCTTGGTGGCGAATTCACTCGTA
TTGCAGATAAAGCTACCGACGAGAATAAATCTAAGCAAGACATCATGCGAGAAGTACTAGTCGATGCCATGACAAGTGCG
ATTTCATACTGGGAGAGAACCACCGGTCAGAGCAAATTTAACTTCGCCGAACAAAGTGGATTGTGGCGCGTTTACTTAGA
TAGAAGTACGCTCCAAACTCGTACACTGGATAAGTACCTACGTATTGAAACACTGCCGAAAACTCCGCGCTGGCGAACCG
TTTTGAGCTCACTCGAGTACATCCTAGAGCACTGCCAAGAACAGAGCCCTGAACGCTCTCACATCATCGCTTTAAGGGAC
AAACTACAACACCTACTAACTACCTAG

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-835)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	79.521	100	0.795