Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LSP20_RS00935 Genome accession   NZ_CP089065
Coordinates   178138..178863 (+) Length   241 a.a.
NCBI ID   WP_003103309.1    Uniprot ID   Q9I629
Organism   Pseudomonas aeruginosa strain UNC_PaerCF34     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 173138..183863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP20_RS00905 (LSP20_00905) - 173258..174136 (-) 879 WP_023113362.1 allophanate hydrolase subunit 1 -
  LSP20_RS00910 (LSP20_00910) - 174138..175514 (-) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  LSP20_RS00915 (LSP20_00915) - 175525..175773 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  LSP20_RS00920 (LSP20_00920) - 175850..176608 (-) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  LSP20_RS00925 (LSP20_00925) - 176726..177652 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  LSP20_RS00930 (LSP20_00930) - 177706..177999 (+) 294 WP_003113255.1 hypothetical protein -
  LSP20_RS00935 (LSP20_00935) comF 178138..178863 (+) 726 WP_003103309.1 ComF family protein Machinery gene
  LSP20_RS00940 (LSP20_00940) - 178905..179225 (+) 321 WP_003103307.1 YfiM family lipoprotein -
  LSP20_RS00945 (LSP20_00945) - 179293..180051 (+) 759 WP_003103305.1 TOBE domain-containing protein -
  LSP20_RS00950 (LSP20_00950) - 180113..181087 (+) 975 WP_023113363.1 serine/threonine protein kinase -
  LSP20_RS00955 (LSP20_00955) rarD 181290..182186 (+) 897 WP_003103301.1 EamA family transporter RarD -
  LSP20_RS00960 (LSP20_00960) - 182876..183391 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27088.60 Da        Isoelectric Point: 11.2212

>NTDB_id=548510 LSP20_RS00935 WP_003103309.1 178138..178863(+) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF34]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=548510 LSP20_RS00935 WP_003103309.1 178138..178863(+) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF34]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I629

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382