Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J4N42_RS07735 Genome accession   NZ_CP071859
Coordinates   1715301..1716725 (+) Length   474 a.a.
NCBI ID   WP_252027262.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1710301..1721725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS07715 (J4N42_07710) - 1711670..1712371 (+) 702 WP_252027257.1 NAD(P)H-binding protein -
  J4N42_RS07720 (J4N42_07715) - 1712394..1713551 (-) 1158 WP_252027258.1 multidrug effflux MFS transporter -
  J4N42_RS07725 (J4N42_07720) - 1713650..1714423 (+) 774 WP_252027259.1 helix-turn-helix transcriptional regulator -
  J4N42_RS07730 (J4N42_07725) - 1714537..1714833 (-) 297 WP_252027261.1 Dabb family protein -
  J4N42_RS07735 (J4N42_07730) sbcB 1715301..1716725 (+) 1425 WP_252027262.1 exodeoxyribonuclease I Machinery gene
  J4N42_RS07740 (J4N42_07735) - 1716785..1717150 (+) 366 WP_252027264.1 CidA/LrgA family protein -
  J4N42_RS07745 (J4N42_07740) - 1717151..1717831 (+) 681 WP_252027266.1 CidB/LrgB family autolysis modulator -
  J4N42_RS07750 (J4N42_07745) cdd 1718051..1718938 (+) 888 WP_252027268.1 cytidine deaminase -
  J4N42_RS07755 (J4N42_07750) - 1719011..1719343 (-) 333 WP_252027270.1 hypothetical protein -
  J4N42_RS07760 (J4N42_07755) - 1719364..1719816 (-) 453 WP_252027271.1 hypothetical protein -
  J4N42_RS07765 (J4N42_07760) - 1719890..1720276 (-) 387 WP_252027272.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54463.54 Da        Isoelectric Point: 5.0799

>NTDB_id=548510 J4N42_RS07735 WP_252027262.1 1715301..1716725(+) (sbcB) [Vibrio sp. SCSIO 43135]
MNNSEQPTFFFFDYETWGTSPAKDRPSQFAGVRTDADFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQKASSQGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGYT
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKLKAAQPKLFNYFLDMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPVAWHPTNQNAVIVVDLAKDPQPLIDLSVEELHTRLYTKRSELGQDELPVPIKLVHLNKCPILAPAKTLTAENAE
TIGIDREQCLANLAIIRKHPEVREKLIGLYNIEREYEKSSDVDTQLYDGFFSPADKASLDIIRETDPNNLAALDITFSDS
RIQPLLFKYRARHYPWTLDESEQSRWANHCREYFENNIENYMLNLENLVHEHESDEKKIAVLKSVYQYVQKLTS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=548510 J4N42_RS07735 WP_252027262.1 1715301..1716725(+) (sbcB) [Vibrio sp. SCSIO 43135]
ATGAACAATAGCGAACAACCCACTTTTTTCTTCTTCGACTACGAGACTTGGGGCACCAGCCCAGCTAAAGATCGACCAAG
TCAGTTTGCTGGAGTTCGAACCGATGCAGATTTTAATATCATCGGTGAACCGCTCGTCATTTATTGTCAGCCGCCTTCCG
ATTACCTTCCCTCGCCAGAAGCGGCACTCATCACCGGAATTACTCCGCAGAAAGCGTCATCGCAAGGGCTTCCTGAACCC
GAATTCATTGCTAAGATCCACGCAGAGCTTTCCAAGCCTAAAACCACCAGCCTTGGCTATAACAGTATTCGGTTTGATGA
TGAAGTCACTCGATACACTTGTTATCGAAACTTTTTCGACCCTTACGCTTGGAGCTGGCAAAACGGGAACTCACGTTGGG
ACTTACTTGATGTCATGCGCGCTTGTCATGCCCTACGCCCAGAAGGCGTAGTGTGGCCTGAAAATGATGAAGGTTACACT
AGCTTTAAGCTCGAACATTTATCCGTCGCCAACGGCATTGAACACGAAAATGCCCACGATGCGATGGCAGACGTTATCGC
TACCATCGAAATGGCGAAAAAGCTAAAAGCAGCGCAACCAAAATTGTTTAACTATTTCTTAGATATGCGCCACAAGCGAA
AGCTGAACGAGCTAGTTGATATCGTCAACATGACTCCACTCATGCATGTATCTGGAATGTTTGGCCGCGACTGTAATTAC
ACCAGCTGGATTGTGCCTGTCGCATGGCACCCTACTAATCAGAATGCAGTGATTGTTGTCGATCTGGCTAAAGATCCACA
GCCTTTAATCGATTTATCGGTAGAAGAATTACACACGCGACTTTACACCAAACGTTCCGAGCTTGGGCAAGATGAGCTGC
CTGTGCCAATTAAACTGGTACATTTAAACAAGTGCCCGATTCTTGCGCCTGCAAAAACACTGACTGCCGAAAACGCTGAA
ACAATTGGAATCGACCGCGAGCAATGTCTTGCCAATTTGGCCATCATACGTAAGCACCCAGAAGTACGCGAAAAGCTGAT
TGGCTTATACAACATTGAACGTGAATACGAGAAGAGCAGCGATGTTGATACGCAGCTCTACGATGGCTTCTTCTCACCAG
CAGATAAAGCCTCGTTGGATATCATCCGTGAAACTGACCCAAATAATCTAGCGGCACTGGATATCACTTTCAGTGACTCT
AGAATCCAACCTTTGCTGTTCAAGTATCGCGCTCGCCACTATCCATGGACACTCGACGAAAGTGAACAGAGCCGTTGGGC
AAACCACTGTCGTGAATACTTCGAGAACAACATTGAAAACTACATGCTGAACCTAGAAAACTTAGTTCACGAGCATGAAA
GTGATGAAAAGAAGATTGCTGTTTTAAAATCGGTCTATCAATACGTTCAAAAGCTAACATCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

77.59

99.789

0.774