Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J4N42_RS04125 Genome accession   NZ_CP071859
Coordinates   871918..873312 (+) Length   464 a.a.
NCBI ID   WP_252029915.1    Uniprot ID   A0A9X3CCC6
Organism   Vibrio sp. SCSIO 43135     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 866918..878312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS04105 (J4N42_04105) rsxB 867524..868114 (-) 591 WP_252029909.1 electron transport complex subunit RsxB -
  J4N42_RS04110 (J4N42_04110) rsxA 868114..868695 (-) 582 WP_252029911.1 electron transport complex subunit RsxA -
  J4N42_RS04120 (J4N42_04120) uvrB 869595..871625 (+) 2031 WP_252029913.1 excinuclease ABC subunit UvrB -
  J4N42_RS04125 (J4N42_04125) luxO 871918..873312 (+) 1395 WP_252029915.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  J4N42_RS04130 (J4N42_04130) luxU 873318..873656 (+) 339 WP_252029917.1 quorum-sensing phosphorelay protein LuxU -
  J4N42_RS04135 (J4N42_04135) - 873642..874532 (-) 891 WP_252029919.1 YvcK family protein -
  J4N42_RS04140 (J4N42_04140) moaA 874856..875845 (+) 990 WP_252029921.1 GTP 3',8-cyclase MoaA -
  J4N42_RS04145 (J4N42_04145) moaB 875923..876435 (+) 513 WP_252029923.1 molybdenum cofactor biosynthesis protein B -
  J4N42_RS04150 (J4N42_04150) moaC 876453..876929 (+) 477 WP_252029925.1 cyclic pyranopterin monophosphate synthase MoaC -
  J4N42_RS04155 (J4N42_04155) moaD 876929..877174 (+) 246 WP_252029927.1 molybdopterin synthase sulfur carrier subunit -
  J4N42_RS04160 (J4N42_04160) moaE 877176..877631 (+) 456 WP_252029929.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51624.87 Da        Isoelectric Point: 5.5200

>NTDB_id=548501 J4N42_RS04125 WP_252029915.1 871918..873312(+) (luxO) [Vibrio sp. SCSIO 43135]
MQQSTDVHKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIDSLSRRTPDLILLDLRLPDMTGMDVLYNVKQTH
PDVPVIFMTAHGSIDTAVDAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLRNEAGNVSNQNYQGFIGSSQTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASQRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGFMSNEEGKGFVRMAPEVVDCFNRYAWPGNVRQLQNVLRNVVVLNNGREITLEMLPPPLNLPSDNQI
RIQPQVKEQVSVHDIFPLWLTEKTAIEQAIEACEGNIPRAAGYLDVSPSTIYRKLQAWNAKEEQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=548501 J4N42_RS04125 WP_252029915.1 871918..873312(+) (luxO) [Vibrio sp. SCSIO 43135]
ATGCAACAATCTACGGATGTTCACAAATCTAAATATCTATTGATGGTCGAAGATACGGCATCTGTAGCCGCATTGTACCG
TTCTTATCTAACCCCACTTGGTATTGATATCAACATTGTGGGCACGGGTCGTGATGCCATCGATAGCTTATCACGTCGTA
CACCAGACCTTATCCTACTCGATCTCCGACTACCTGATATGACGGGGATGGATGTGTTGTATAACGTTAAGCAAACACAC
CCAGACGTCCCTGTTATTTTTATGACGGCTCATGGCTCTATCGATACTGCTGTTGATGCGATGCGCCATGGTGCACAAGA
CTTCTTGATTAAGCCATGTGAAGCAGACCGACTGCGTGTTACGGTCAATAATGCGATTCGCAAAGCGACCAAGCTACGAA
ATGAAGCCGGAAATGTCAGCAATCAGAATTACCAAGGCTTTATAGGCAGTAGCCAAACCATGCAAGCGGTATATCGCACT
ATCGACTCGGCAGCATCCAGTAAAGCCAGTATTTTCATTACCGGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCGGAAGC
GATCCACGCAGCGAGTCAGCGCGGTGATAAGCCATTTATTGCCATTAACTGTGCTGCGATACCGAAAGACTTGATTGAGA
GCGAACTGTTTGGTCACGTGAAGGGTGCATTTACTGGTGCTTCCACAGATCGTCAAGGTGCAGCAGAGCTTGCTGACGGT
GGTACGCTATTTTTGGATGAGCTGTGTGAGATGGACTTAGACCTTCAAACTAAGCTGCTTCGTTTCATTCAGACTGGTAC
ATTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTTGATGTGCGTTTTGTTTGTGCAACCAACCGAGACCCATGGAAAG
AGGTTCAGGAAGGGCGCTTTCGAGAAGATTTGTACTATCGACTTTACGTGATCCCACTGCATTTGCCGCCTTTGCGTGAA
CGTGGGGAAGACGTGATTGAAATCGCTTATTCGTTGCTGGGTTTTATGTCGAATGAAGAAGGAAAAGGTTTTGTTCGAAT
GGCTCCAGAAGTCGTGGATTGCTTCAATCGATATGCGTGGCCGGGGAACGTTCGACAATTGCAGAACGTATTACGCAATG
TGGTTGTGCTAAATAATGGAAGAGAGATCACTCTGGAAATGCTTCCTCCACCACTAAACTTACCATCAGACAATCAAATC
CGTATTCAACCTCAAGTGAAGGAACAAGTGTCGGTACACGACATATTCCCTCTCTGGTTAACGGAAAAAACAGCCATAGA
GCAGGCAATCGAAGCGTGTGAGGGGAACATCCCACGTGCTGCTGGTTACCTAGACGTAAGCCCCTCAACGATCTACCGTA
AACTCCAAGCTTGGAACGCAAAAGAAGAGCAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.444

96.121

0.841