Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SPYJRS4_RS04550 Genome accession   NZ_AP012335
Coordinates   924781..925851 (+) Length   356 a.a.
NCBI ID   WP_027968836.1    Uniprot ID   Q5XC26
Organism   Streptococcus pyogenes JRS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 919781..930851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYJRS4_RS04530 (SPYJRS4_0941) - 920774..921472 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  SPYJRS4_RS04535 (SPYJRS4_0942) - 921570..921902 (+) 333 WP_002989745.1 putative DNA-binding protein -
  SPYJRS4_RS04540 (SPYJRS4_0943) ffh 921917..923479 (+) 1563 WP_011017792.1 signal recognition particle protein -
  SPYJRS4_RS04545 (SPYJRS4_0944) - 923614..924312 (-) 699 WP_011184534.1 helix-turn-helix transcriptional regulator -
  SPYJRS4_RS04550 (SPYJRS4_0945) xerS 924781..925851 (+) 1071 WP_027968836.1 tyrosine recombinase XerS Machinery gene
  SPYJRS4_RS04555 (SPYJRS4_0948) - 926550..927032 (+) 483 WP_011184531.1 PASTA domain-containing protein -
  SPYJRS4_RS04560 (SPYJRS4_0949) citC 927121..928173 (+) 1053 WP_011184530.1 [citrate (pro-3S)-lyase] ligase -
  SPYJRS4_RS04565 (SPYJRS4_0950) - 928283..929677 (-) 1395 WP_021340040.1 oxaloacetate decarboxylase subunit alpha -
  SPYJRS4_RS04570 (SPYJRS4_0951) citX 929692..930270 (-) 579 WP_011888860.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41487.57 Da        Isoelectric Point: 9.5552

>NTDB_id=54850 SPYJRS4_RS04550 WP_027968836.1 924781..925851(+) (xerS) [Streptococcus pyogenes JRS4]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=54850 SPYJRS4_RS04550 WP_027968836.1 924781..925851(+) (xerS) [Streptococcus pyogenes JRS4]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTATAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTTCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5XC26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803

Multiple sequence alignment