Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J4N42_RS02335 Genome accession   NZ_CP071859
Coordinates   484998..485516 (+) Length   172 a.a.
NCBI ID   WP_252029461.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 479998..490516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS02325 (J4N42_02325) gshA 482772..484337 (+) 1566 WP_252029457.1 glutamate--cysteine ligase -
  J4N42_RS02330 (J4N42_02330) - 484345..484962 (+) 618 WP_252029459.1 hypothetical protein -
  J4N42_RS02335 (J4N42_02335) luxS 484998..485516 (+) 519 WP_252029461.1 S-ribosylhomocysteine lyase Regulator
  J4N42_RS02340 (J4N42_02340) - 485584..486861 (-) 1278 WP_252029462.1 CNNM domain-containing protein -
  J4N42_RS02345 (J4N42_02345) - 486972..487766 (-) 795 WP_252029464.1 inner membrane protein YpjD -
  J4N42_RS02350 (J4N42_02350) ffh 487958..489343 (+) 1386 WP_252029466.1 signal recognition particle protein -
  J4N42_RS02355 (J4N42_02355) rpsP 489632..489880 (+) 249 WP_117233716.1 30S ribosomal protein S16 -
  J4N42_RS02360 (J4N42_02360) rimM 489911..490465 (+) 555 WP_252029469.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18915.68 Da        Isoelectric Point: 4.6229

>NTDB_id=548498 J4N42_RS02335 WP_252029461.1 484998..485516(+) (luxS) [Vibrio sp. SCSIO 43135]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDQVEIIDISP
MGCRTGFYMSLIGTPGEDQVAAAWLAAMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAKAIAKAIIEAGISVNQNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=548498 J4N42_RS02335 WP_252029461.1 484998..485516(+) (luxS) [Vibrio sp. SCSIO 43135]
ATGCCACTATTAGATAGTTTTACCGTTGACCACACACGAATGAATGCTCCAGCGGTACGCGTTGCGAAAACAATGCAAAC
CCCTAAAGGCGACACTATCACTGTGTTCGACTTACGTTTCACTGCACCAAACAAAGATATTTTGTCTGAAAAAGGCATTC
ATACTTTAGAGCACTTGTATGCAGGCTTTATGCGTAACCACTTAAACGGTGACCAAGTAGAAATCATTGATATTTCTCCA
ATGGGGTGTCGTACGGGTTTCTACATGAGTTTGATTGGTACGCCGGGTGAAGATCAAGTAGCAGCTGCGTGGCTAGCGGC
AATGGAAGACGTGCTGAAAGTAGAAAGCCAGAACAAGATCCCAGAGCTAAACGAATACCAATGTGGTACGGCGGCAATGC
ATTCACTTGAAGAAGCGAAAGCTATCGCTAAAGCCATCATTGAAGCAGGTATTTCTGTGAATCAAAATGATGAACTGGCG
CTTCCTGAATCAATGCTGAAAGAGTTAAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.228

99.419

0.907