Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LSP22_RS22505 Genome accession   NZ_CP089064
Coordinates   4821895..4822224 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF35     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4816895..4827224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP22_RS22490 (LSP22_22490) - 4817186..4818391 (+) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  LSP22_RS22495 (LSP22_22495) - 4818584..4819612 (+) 1029 WP_003116434.1 glycosyltransferase family 4 protein -
  LSP22_RS22500 (LSP22_22500) - 4819707..4821704 (+) 1998 WP_074197051.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  LSP22_RS22505 (LSP22_22505) comEA/comE1 4821895..4822224 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  LSP22_RS22515 (LSP22_22515) - 4822441..4823637 (-) 1197 WP_003110849.1 amino acid aminotransferase -
  LSP22_RS22520 (LSP22_22520) uvrB 4823825..4825837 (+) 2013 WP_231821981.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=548488 LSP22_RS22505 WP_003091430.1 4821895..4822224(+) (comEA/comE1) [Pseudomonas aeruginosa strain UNC_PaerCF35]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=548488 LSP22_RS22505 WP_003091430.1 4821895..4822224(+) (comEA/comE1) [Pseudomonas aeruginosa strain UNC_PaerCF35]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385