Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   J4N38_RS19995 Genome accession   NZ_CP071858
Coordinates   898302..899399 (-) Length   365 a.a.
NCBI ID   WP_252036733.1    Uniprot ID   A0A9Q8XK84
Organism   Vibrio sp. SCSIO 43145     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 893302..904399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N38_RS19980 (J4N38_19905) glpD 893442..894974 (+) 1533 WP_252036730.1 glycerol-3-phosphate dehydrogenase -
  J4N38_RS19985 (J4N38_19910) - 895081..895746 (+) 666 WP_252036731.1 PilZ domain-containing protein -
  J4N38_RS19990 (J4N38_19915) luxQ 895732..898302 (-) 2571 WP_252036732.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  J4N38_RS19995 (J4N38_19920) luxP 898302..899399 (-) 1098 WP_252036733.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  J4N38_RS20000 (J4N38_19925) - 899550..900689 (-) 1140 WP_252036734.1 conjugal transfer protein TraF -
  J4N38_RS20005 (J4N38_19930) - 900756..901073 (-) 318 WP_239863979.1 GIY-YIG nuclease family protein -
  J4N38_RS20010 (J4N38_19935) - 901073..901729 (-) 657 WP_239863978.1 YceH family protein -
  J4N38_RS20015 (J4N38_19940) - 901759..901953 (-) 195 WP_252036735.1 hypothetical protein -
  J4N38_RS20020 (J4N38_19945) - 902132..902467 (+) 336 WP_286037073.1 DUF496 family protein -
  J4N38_RS20025 (J4N38_19950) - 902763..903008 (+) 246 WP_239836237.1 YgjV family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41249.58 Da        Isoelectric Point: 6.3127

>NTDB_id=548480 J4N38_RS19995 WP_252036733.1 898302..899399(-) (luxP) [Vibrio sp. SCSIO 43145]
MLKTTFLSLAVIASAASHAHTTQVLNGYWQYDEYLESNPVQKQLTDALSETVRNYPIPISLKQDKPVSIAVVYPGQQISD
YWVRNIRAFETRLEKLGISYKINQVFTRPNLDVRQQSLSLLEAVQNKADYLIFTLDTTRHRKFIEHVLSSTNTKLILQNI
TTPVRAWDDQQPFMYVGFDHIKGARIIEQYYKETVPKQSRYSVLYFSEGYVSDARGDTFIEEMSHHDSYQLSSSYYTTAT
RESGFKAAVKAIEKDPNLSFIYACSTDVALGAADALKSMKREDILINGWGGGSAELEAIANGQLDVTAMRMNDDTGIAMA
EAIKWDLEGKAVPHVYSGDFEVVAKTDSPAKVEKLKQRAFRYSDQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=548480 J4N38_RS19995 WP_252036733.1 898302..899399(-) (luxP) [Vibrio sp. SCSIO 43145]
ATGTTAAAAACAACGTTCTTGTCACTAGCCGTCATTGCGTCGGCGGCAAGCCATGCGCATACCACTCAAGTCCTCAATGG
TTATTGGCAGTATGATGAATACCTCGAGTCTAACCCAGTACAAAAGCAGTTAACGGATGCGCTTTCAGAAACGGTGAGAA
ACTATCCGATTCCCATTTCTTTAAAACAGGATAAACCCGTATCGATTGCGGTTGTGTATCCTGGGCAGCAAATTTCAGAT
TATTGGGTAAGAAATATTAGGGCCTTCGAAACCCGCCTTGAAAAACTGGGGATCAGCTATAAGATTAATCAGGTTTTCAC
ACGTCCTAACCTAGATGTCAGACAACAAAGTTTATCTTTATTAGAAGCGGTACAGAATAAAGCGGACTACCTGATTTTTA
CTCTTGATACCACCCGACATCGCAAGTTTATCGAGCATGTGCTTAGCTCGACAAACACTAAGCTTATTCTACAAAACATC
ACAACTCCGGTAAGAGCTTGGGATGATCAACAACCCTTCATGTACGTTGGATTCGATCATATCAAAGGTGCTCGAATCAT
TGAGCAGTACTACAAAGAGACTGTCCCTAAGCAAAGCCGTTACTCAGTACTCTATTTCTCCGAAGGCTATGTGAGTGATG
CGCGCGGTGATACGTTTATCGAAGAAATGAGTCACCACGACTCTTATCAACTTTCTTCATCCTATTATACAACAGCTACG
CGAGAGTCCGGCTTTAAGGCCGCGGTTAAAGCGATTGAGAAAGATCCGAACCTTTCATTTATCTATGCGTGTTCAACCGA
TGTTGCTTTAGGTGCAGCAGATGCTCTTAAGTCAATGAAAAGAGAAGATATTCTCATCAATGGTTGGGGAGGGGGAAGTG
CAGAATTGGAAGCGATTGCTAACGGGCAGTTAGATGTCACTGCGATGCGAATGAATGATGATACGGGGATCGCAATGGCT
GAAGCAATCAAGTGGGATCTAGAAGGGAAAGCTGTACCTCATGTTTATTCTGGTGATTTTGAGGTCGTGGCTAAGACAGA
CAGCCCGGCTAAAGTTGAGAAACTTAAGCAAAGAGCATTTAGGTACTCGGATCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.288

100

0.633