Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   J4N38_RS19075 Genome accession   NZ_CP071858
Coordinates   696022..697203 (-) Length   393 a.a.
NCBI ID   WP_239864149.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43145     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 691022..702203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N38_RS19070 (J4N38_18990) cqsS 693927..695984 (+) 2058 WP_252037488.1 hybrid sensor histidine kinase/response regulator Regulator
  J4N38_RS19075 (J4N38_18995) cqsA 696022..697203 (-) 1182 WP_239864149.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J4N38_RS19080 (J4N38_19000) - 697421..698389 (-) 969 WP_239864148.1 TDT family transporter -
  J4N38_RS19085 (J4N38_19005) clcA 698508..699908 (-) 1401 WP_252037489.1 H(+)/Cl(-) exchange transporter ClcA -
  J4N38_RS19090 (J4N38_19010) - 700313..701290 (-) 978 WP_239836350.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43917.07 Da        Isoelectric Point: 6.8926

>NTDB_id=548479 J4N38_RS19075 WP_239864149.1 696022..697203(-) (cqsA) [Vibrio sp. SCSIO 43145]
MNTLNHYPPLPDFISKKIEHYLDDLVRKNKNGKHLVLGARPSNNDLVLQSNDYLDLSNNAEIIDHHVNSILARKNSPFMS
GIFLRDEASQPKVEKKLAEYVGFKSCLLSQSGWAANTALLQTVCDSETNVYIDFFAHMSLWEGARIAGANIHPFMHNNVK
HLDKLINRHGPGIVLVDSVYSTIGTMAPLVDIVLLSKEYGCAIVVDESHSLGTHGKQGAGLLKSLKLSHQVDFMTASLAK
TFAYRAGAIWCNNQANDCIPFVAYPAIFSSTMLPHELDRLDKTLDVIKKYDNERDYLQEISRYLKTNLSSIGLTIRSDTQ
IIALETGDEKNTERVRDFLESHGIFGAVFCRPATTANKNIIRLSLNSSTTKSDADQIINTCKLVNEQPDMYFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=548479 J4N38_RS19075 WP_239864149.1 696022..697203(-) (cqsA) [Vibrio sp. SCSIO 43145]
ATGAATACGCTTAACCATTACCCACCCTTGCCAGATTTTATAAGTAAAAAAATAGAACACTATCTGGATGATCTTGTCCG
TAAAAACAAAAACGGAAAACACTTAGTTTTAGGTGCTAGGCCAAGTAACAATGACCTCGTGTTACAGAGTAATGATTATC
TCGATTTATCCAATAACGCTGAAATCATTGATCATCATGTAAATTCAATATTGGCGCGTAAAAACAGCCCCTTCATGTCA
GGGATATTTCTCAGAGACGAAGCGTCTCAACCCAAAGTAGAGAAAAAATTGGCCGAGTATGTGGGGTTTAAGTCTTGCTT
GCTCTCTCAGTCTGGTTGGGCTGCCAATACAGCACTACTACAAACTGTTTGTGATAGCGAGACCAATGTCTATATTGATT
TCTTTGCACATATGTCATTGTGGGAAGGAGCAAGAATTGCGGGGGCAAATATCCACCCTTTTATGCACAATAACGTTAAG
CATCTGGATAAGCTGATTAATAGACACGGACCTGGTATCGTTCTAGTTGACTCTGTATACAGTACAATTGGAACCATGGC
ACCCCTTGTTGACATTGTCTTACTGTCCAAAGAGTATGGCTGCGCAATCGTCGTTGACGAATCACACTCTTTAGGCACCC
ATGGCAAGCAAGGGGCTGGGCTGCTTAAATCGCTTAAGCTAAGCCACCAAGTCGATTTCATGACCGCGAGTCTCGCAAAA
ACATTCGCTTATCGAGCTGGGGCGATTTGGTGTAATAATCAGGCTAATGATTGTATTCCCTTTGTCGCTTATCCTGCTAT
TTTCAGTTCGACGATGTTGCCACATGAACTGGACAGATTAGATAAAACGTTGGACGTCATAAAGAAATATGACAATGAGC
GGGATTACCTTCAAGAAATAAGTCGTTATTTAAAAACGAACTTATCAAGTATAGGTTTAACAATTCGTAGCGATACACAA
ATAATTGCTCTTGAAACCGGTGACGAAAAAAATACAGAGCGAGTACGCGATTTTCTTGAGTCTCACGGTATTTTTGGTGC
TGTATTTTGTCGACCAGCCACAACAGCAAATAAAAATATAATTCGATTATCTTTAAATAGCTCCACCACTAAATCGGATG
CAGATCAGATAATAAATACTTGTAAGCTGGTTAATGAACAGCCAGATATGTATTTTATTTAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

61.039

97.964

0.598