Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J4N38_RS13780 Genome accession   NZ_CP071857
Coordinates   2924948..2925466 (-) Length   172 a.a.
NCBI ID   WP_252035401.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43145     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2919948..2930466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N38_RS13750 (J4N38_13675) - 2920450..2920833 (-) 384 WP_252035397.1 hypothetical protein -
  J4N38_RS13755 (J4N38_13680) - 2920915..2922162 (-) 1248 WP_252035398.1 integrase family protein -
  J4N38_RS13760 (J4N38_13685) - 2922227..2922688 (-) 462 WP_252035399.1 Panacea domain-containing protein -
  J4N38_RS13765 (J4N38_13690) - 2922681..2923673 (-) 993 WP_252035400.1 hypothetical protein -
  J4N38_RS13775 (J4N38_13700) - 2924426..2924902 (+) 477 WP_239870956.1 RDD family protein -
  J4N38_RS13780 (J4N38_13705) luxS 2924948..2925466 (-) 519 WP_252035401.1 S-ribosylhomocysteine lyase Regulator
  J4N38_RS13785 (J4N38_13710) - 2925489..2926052 (-) 564 WP_239838916.1 hypothetical protein -
  J4N38_RS13790 (J4N38_13715) gshA 2926093..2927661 (-) 1569 WP_239876553.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19105.88 Da        Isoelectric Point: 5.0066

>NTDB_id=548469 J4N38_RS13780 WP_252035401.1 2924948..2925466(-) (luxS) [Vibrio sp. SCSIO 43145]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGNNVEIIDISP
MGCRTGFYMSLIGTPSEDQVAQSWLSAMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAQTIIDAGIKVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=548469 J4N38_RS13780 WP_252035401.1 2924948..2925466(-) (luxS) [Vibrio sp. SCSIO 43145]
ATGCCATTATTAGATAGCTTTACTGTGGATCACACTCGTATGAATGCACCAGCGGTGCGTGTAGCGAAGACGATGACCAC
TCCGAAAGGGGATACCATAACAGTGTTTGATTTACGCTTTACCGCGCCTAACAAAGACATACTTTCGGAGAAAGGCATTC
ATACGCTTGAGCATTTATATGCGGGCTTTATGCGTAACCACCTGAATGGTAATAATGTTGAGATTATCGATATTTCCCCT
ATGGGTTGCCGTACAGGGTTTTATATGAGTCTGATTGGTACACCTTCAGAAGATCAGGTAGCTCAGTCGTGGTTATCCGC
TATGCAAGACGTGCTCAAGGTCGAAAGTCAGAACAAAATCCCCGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTAGAGGAAGCAAAGCAAATTGCGCAGACAATTATCGATGCGGGAATTAAAGTTAATAAGAACGATGAGTTGGCA
CTACCAGAGTCGATGCTAAAAGAGTTGAAAGTAGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878