Detailed information NTG0548468

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J4N38_RS13455
• Genome accession: NZ_CP071857
• Coordinates: 2864767..2865750 (-)
• Length: 327 a.a.
• NCBI ID: WP_239837826.1
• Uniprot ID: A0A9Q8XGC0
• Organism: Vibrio sp. SCSIO 43145
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2859767..2870750

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N38_RS13430 (J4N38_13350)	rimM	2859882..2860430 (-)	549	WP_252035363.1	ribosome maturation factor RimM	-
J4N38_RS13435 (J4N38_13355)	rpsP	2860460..2860708 (-)	249	WP_005438039.1	30S ribosomal protein S16	-
J4N38_RS13440 (J4N38_13360)	ffh	2860916..2862295 (-)	1380	WP_239876864.1	signal recognition particle protein	-
J4N38_RS13445 (J4N38_13365)	-	2862504..2863298 (+)	795	WP_239837824.1	inner membrane protein YpjD	-
J4N38_RS13450 (J4N38_13370)	-	2863421..2864695 (+)	1275	WP_252035364.1	CNNM domain-containing protein	-
J4N38_RS13455 (J4N38_13375)	rpoS	2864767..2865750 (-)	984	WP_239837826.1	RNA polymerase sigma factor RpoS	Regulator
J4N38_RS13460 (J4N38_13380)	nlpD	2865817..2866728 (-)	912	WP_252035365.1	murein hydrolase activator NlpD	-
J4N38_RS13465 (J4N38_13385)	-	2866731..2867357 (-)	627	WP_239865274.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J4N38_RS13470 (J4N38_13390)	surE	2867360..2868118 (-)	759	WP_252035366.1	5'/3'-nucleotidase SurE	-
J4N38_RS13475 (J4N38_13395)	truD	2868115..2869161 (-)	1047	WP_252035367.1	tRNA pseudouridine(13) synthase TruD	-
J4N38_RS13480 (J4N38_13400)	ispF	2869208..2869687 (-)	480	WP_252036649.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J4N38_RS13485 (J4N38_13405)	ispD	2869691..2870395 (-)	705	WP_239876863.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J4N38_RS13490 (J4N38_13410)	ftsB	2870398..2870676 (-)	279	WP_239865280.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37395.30 Da
• Isoelectric Point: 4.7232

>NTDB_id=548468 J4N38_RS13455 WP_239837826.1 2864767..2865750(-) (rpoS) [Vibrio sp. SCSIO 43145]
MSISNAATKVEEFELGPTMESIQASEQTTTNRTQSEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIASQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFSINEE

Nucleotide

• Length: 984 bp

>NTDB_id=548468 J4N38_RS13455 WP_239837826.1 2864767..2865750(-) (rpoS) [Vibrio sp. SCSIO 43145]
ATGAGTATCAGCAATGCAGCAACGAAAGTCGAAGAGTTTGAGCTTGGACCTACAATGGAATCGATTCAAGCAAGCGAACA
GACTACTACCAACCGCACCCAATCTGAGGACGCCAAAGAGGAATTTGACGCTTCCACAAAGAGTCTGGATGCCACCCAAC
TTTACTTAGGGGAAATCGGTTTTTCTCCGCTACTCACCGCAGAAGAAGAAGTGTTGTACGCTCGCCGTGCCTTAAGAGGC
GACGAAGCTGCGCGTAAACGCATGATTGAAAGTAACCTTCGTCTAGTAGTAAAAATATCTCGTCGATATAGCAATCGTGG
TCTTGCCTTACTCGACTTAATCGAAGAGGGCAACCTTGGATTGATCCGAGCGGTTGAGAAGTTTGATCCTGAAAGAGGTT
TCCGATTTTCCACTTACGCCACATGGTGGATTCGTCAGACTATTGAACGCGCCCTGATGAATCAGACTCGTACCATTCGT
TTGCCAATTCATGTTGTCAAAGAACTCAATATTTATTTGCGTACTGCTCGAGAGCTATCACAAAAGCTTGACCATGAACC
AACGGCAGAAGAGATTGCATCACAGCTGGATAAGCCTGTTGACGATGTCAGTAAGATGCTACGCCTCAACGAACGCATTA
GCTCCGTTGATACACCGATTGGTGGTGATGGTGAGAAAGCGCTTCTGGACATTATTCCAGATGTAAATAACTCGGACCCA
GAAGTATCCACTCAAGATGATGATATTAAGTCTTCATTGATCCACTGGTTAGATGAGCTCAATCCGAAGCAGAAAGAAGT
ACTGGCTCGTCGATTTGGACTACTAGGGTATGAACCCTCTACCTTGGAAGAAGTGGGACGAGAAATCAATTTAACTCGTG
AACGCGTTCGCCAGATCCAAGTCGAAGGCTTACGCCGCTTGAGAGAGATCCTGATAAAACAGGGGCTGAATATGGAAAAT
CTATTCAGTATAAACGAAGAGTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.988	100	0.85