Detailed information NTG0548467

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J4N38_RS13400
• Genome accession: NZ_CP071857
• Coordinates: 2856068..2856937 (+)
• Length: 289 a.a.
• NCBI ID: WP_252035358.1
• Uniprot ID: A0A9Q8XG74
• Organism: Vibrio sp. SCSIO 43145
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2851068..2861937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N38_RS13380 (J4N38_13300)	nadC	2851573..2852460 (+)	888	WP_252035354.1	carboxylating nicotinate-nucleotide diphosphorylase	-
J4N38_RS13385 (J4N38_13305)	-	2852684..2853124 (+)	441	WP_252035355.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
J4N38_RS13390 (J4N38_13310)	pilB	2853124..2854773 (+)	1650	WP_252035356.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J4N38_RS13395 (J4N38_13315)	-	2854783..2856018 (+)	1236	WP_252035357.1	type II secretion system F family protein	-
J4N38_RS13400 (J4N38_13320)	pilD	2856068..2856937 (+)	870	WP_252035358.1	A24 family peptidase	Machinery gene
J4N38_RS13405 (J4N38_13325)	coaE	2856939..2857547 (+)	609	WP_252035359.1	dephospho-CoA kinase	-
J4N38_RS13410 (J4N38_13330)	zapD	2857581..2858321 (+)	741	WP_252035360.1	cell division protein ZapD	-
J4N38_RS13415 (J4N38_13335)	yacG	2858374..2858565 (+)	192	WP_252035361.1	DNA gyrase inhibitor YacG	-
J4N38_RS13420 (J4N38_13340)	rplS	2858697..2859050 (-)	354	WP_045977783.1	50S ribosomal protein L19	-
J4N38_RS13425 (J4N38_13345)	trmD	2859092..2859835 (-)	744	WP_252035362.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
J4N38_RS13430 (J4N38_13350)	rimM	2859882..2860430 (-)	549	WP_252035363.1	ribosome maturation factor RimM	-
J4N38_RS13435 (J4N38_13355)	rpsP	2860460..2860708 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32519.43 Da
• Isoelectric Point: 6.2214

>NTDB_id=548467 J4N38_RS13400 WP_252035358.1 2856068..2856937(+) (pilD) [Vibrio sp. SCSIO 43145]
MELFNYYPWLFPTLATLFGLIIGSFLNVVIHRLPKMMEREWRHECAESFPEYGIQPPEGTYNLSVPRSTCPSCNTQIRNI
DNIPLISWLALRGQCRACQHRISPRYPLVELISGLMSFSIAYQFELSVFAVALLFFTFVLIAATFIDLDTMLLPDQLTLP
LIWSGIALSLLGLSPVSLQDSVTGAIVGYLCLWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVIVLLSSLVGL
LFGLIQLRLQKQGIDKAFPFGPYLAIAGWISAMWGESIINWYFTQILGI

Nucleotide

• Length: 870 bp

>NTDB_id=548467 J4N38_RS13400 WP_252035358.1 2856068..2856937(+) (pilD) [Vibrio sp. SCSIO 43145]
ATGGAACTTTTCAATTATTACCCATGGTTGTTTCCAACCCTAGCGACCCTTTTTGGTCTGATCATAGGCAGCTTTCTTAA
CGTCGTCATTCATCGCTTGCCTAAGATGATGGAACGAGAGTGGCGACATGAATGCGCAGAGAGTTTTCCAGAGTATGGCA
TTCAGCCACCTGAGGGGACTTATAATCTGAGTGTCCCTAGGTCAACTTGCCCAAGCTGTAACACTCAAATTCGTAATATT
GATAATATTCCGCTGATCAGTTGGCTTGCTTTACGTGGTCAATGCCGAGCTTGTCAACACCGCATTTCCCCACGCTACCC
TCTCGTTGAACTTATCTCGGGGTTAATGAGTTTCTCGATTGCTTACCAATTTGAACTGAGTGTGTTCGCCGTTGCCTTAT
TGTTCTTTACCTTTGTTTTAATCGCAGCAACTTTCATCGATCTCGATACTATGCTGTTGCCTGATCAATTGACCTTACCA
CTGATTTGGTCTGGGATAGCATTATCATTACTAGGCTTGAGCCCTGTGTCTTTGCAAGACTCTGTGACTGGAGCAATAGT
AGGCTATTTGTGCCTATGGTCTATTTACTGGGGGTTCAAACTTCTCACTGGTAAAGAAGGCATGGGTTATGGTGATTTCA
AGCTTCTTGCCGCACTAGGCGCTTGGTTAGGCTGGCAGTATTTGCCTGTTATTGTTCTGCTTTCCTCACTCGTTGGATTA
CTTTTTGGCCTAATTCAACTACGACTACAAAAACAAGGGATAGACAAAGCCTTCCCGTTTGGCCCCTACCTTGCGATTGC
AGGCTGGATCAGTGCAATGTGGGGAGAAAGCATCATCAACTGGTACTTTACACAAATTCTGGGGATCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	76.389	99.654	0.761
pilD	Vibrio campbellii strain DS40M4	74.74	100	0.747
pilD	Acinetobacter nosocomialis M2	50.741	93.426	0.474
pilD	Acinetobacter baumannii D1279779	50.37	93.426	0.471
pilD	Neisseria gonorrhoeae MS11	46.909	95.156	0.446