Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J4N38_RS08525 Genome accession   NZ_CP071857
Coordinates   1774313..1775800 (+) Length   495 a.a.
NCBI ID   WP_252034580.1    Uniprot ID   A0A9Q8UP16
Organism   Vibrio sp. SCSIO 43145     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1769313..1780800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N38_RS08510 (J4N38_08450) - 1770471..1771166 (+) 696 WP_252034574.1 chromosome partitioning protein ParA -
  J4N38_RS08515 (J4N38_08455) - 1771176..1771976 (+) 801 WP_252034576.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  J4N38_RS08520 (J4N38_08460) - 1771999..1774293 (+) 2295 WP_252034578.1 response regulator -
  J4N38_RS08525 (J4N38_08465) luxO 1774313..1775800 (+) 1488 WP_252034580.1 sigma-54 dependent transcriptional regulator Regulator
  J4N38_RS08530 (J4N38_08470) - 1775778..1776845 (+) 1068 WP_252034582.1 glycosyltransferase family 4 protein -
  J4N38_RS08535 (J4N38_08475) - 1776945..1778147 (+) 1203 WP_252034584.1 glycosyltransferase -
  J4N38_RS08540 (J4N38_08480) - 1778140..1779336 (+) 1197 WP_252034586.1 glycosyltransferase -
  J4N38_RS08545 (J4N38_08485) - 1779347..1780798 (+) 1452 WP_252034588.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55539.45 Da        Isoelectric Point: 5.5381

>NTDB_id=548460 J4N38_RS08525 WP_252034580.1 1774313..1775800(+) (luxO) [Vibrio sp. SCSIO 43145]
MRAKVLLIEDSTSLAVLYKQYVKDEAFDLFHVETGRDAKAFIERNVPQLVILDLKLPDMNGEDILDWLNENQVPTSVVVA
TAHGSVDVAVSLLQKGAKDFLEKPIQADRLKTSINLHLQQAKLEHLVEDIEAKFDRNRFHGFIGSCLPMQGVYKIIDSVA
PTTASVFIIGESGTGKEVCAEAIHKESKRSDKPFIAINCGAIPKDLMESEIFGHVKGAFTGATTDRKGAASLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEMKVDVRIICATNRDPLLEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
TTLATHFLKLFAKEDRKKFNGINRDAESLLKRYSWPGNVRQLQNVIRNIVVLNDEPKLSVSHLPEQISKNSKPSRPKVTQ
STVNHEVSAQTDPITPVEIPAQETGRMIESESPQNTIPATIRPMWQVERETIQQAIDFCDGNVLNAAVLLELSPSTVYRK
KQAWEAEEDEQQYAD

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=548460 J4N38_RS08525 WP_252034580.1 1774313..1775800(+) (luxO) [Vibrio sp. SCSIO 43145]
ATGAGAGCAAAAGTACTACTGATTGAAGACTCCACTTCTCTTGCAGTCCTTTACAAACAGTATGTAAAAGATGAAGCGTT
TGATCTGTTTCATGTAGAAACAGGTCGCGATGCCAAAGCATTCATAGAGCGCAATGTGCCACAGCTTGTGATTTTAGATC
TCAAGCTTCCGGACATGAACGGTGAAGATATCTTAGACTGGCTCAACGAGAACCAAGTACCTACCTCCGTGGTCGTCGCG
ACCGCCCATGGTTCAGTGGATGTTGCAGTCAGCTTGTTGCAAAAAGGAGCTAAAGACTTTCTCGAAAAGCCAATTCAGGC
AGACCGACTCAAAACATCGATAAATCTCCACTTACAGCAAGCTAAACTCGAACATTTAGTCGAAGATATCGAAGCGAAAT
TCGACAGAAATCGCTTCCACGGATTCATCGGCTCGTGCCTGCCTATGCAGGGCGTTTACAAGATCATTGACTCTGTTGCT
CCGACTACCGCGAGCGTTTTCATTATCGGAGAAAGCGGCACAGGTAAAGAAGTGTGCGCTGAAGCAATCCATAAAGAAAG
TAAACGAAGCGACAAGCCTTTCATAGCTATCAACTGTGGTGCTATTCCCAAAGATCTTATGGAAAGCGAAATTTTTGGCC
ATGTGAAAGGTGCATTCACGGGTGCGACTACGGACAGAAAAGGCGCGGCATCTTTAGCTCATGGAGGAACCCTTTTCCTT
GACGAGTTATGTGAGATGGAGCTGGAAATGCAGAAAAAACTGCTACGTTTCCTACAGACAGGGACTTTCACCCCACTCGG
GGGTTCGAAAGAAATGAAGGTCGATGTGAGAATAATCTGCGCGACCAACCGTGACCCATTGCTAGAAGTTGAAGAAGGCC
GATTCCGAGAAGACTTGTACTACCGCGTTCATGTTGTGCCGATTGAAATGCCGCCTCTAAGAGAACGCGGAAATGACATC
ACAACGCTAGCGACTCATTTCCTTAAGCTGTTCGCTAAAGAAGATAGGAAGAAATTTAATGGCATCAACCGAGATGCCGA
ATCGTTGCTCAAGCGTTACTCATGGCCGGGGAACGTAAGACAACTGCAGAATGTCATTCGTAACATTGTCGTTCTTAATG
ATGAACCCAAACTTTCTGTGTCTCACCTACCCGAACAAATTTCAAAAAATAGTAAACCTTCAAGGCCTAAAGTCACACAA
TCGACAGTCAACCATGAAGTATCAGCTCAAACAGACCCCATCACGCCAGTCGAAATACCAGCACAAGAGACCGGTCGAAT
GATTGAGAGTGAGAGTCCACAAAATACTATACCAGCTACGATACGCCCGATGTGGCAGGTTGAAAGAGAAACCATTCAAC
AAGCCATTGATTTTTGCGATGGTAATGTCCTCAACGCAGCAGTATTACTCGAGTTGAGTCCATCAACCGTTTATCGTAAA
AAACAGGCTTGGGAAGCCGAAGAAGATGAGCAGCAATACGCGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Bacterial regulatory protein, Fis family (HTH_8)

(444-480)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50

96.566

0.483