Detailed information NTG0548459

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: J4N38_RS07455
• Genome accession: NZ_CP071857
• Coordinates: 1531689..1533113 (-)
• Length: 474 a.a.
• NCBI ID: WP_252036489.1
• Uniprot ID: A0A9Q9CX83
• Organism: Vibrio sp. SCSIO 43145
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1526689..1538113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N38_RS07435 (J4N38_07375)	-	1528112..1529317 (+)	1206	WP_252036487.1	HD-GYP domain-containing protein	-
J4N38_RS07440 (J4N38_07380)	cdd	1529366..1530253 (-)	888	WP_252036488.1	cytidine deaminase	-
J4N38_RS07445 (J4N38_07385)	-	1530503..1531180 (-)	678	WP_239836523.1	CidB/LrgB family autolysis modulator	-
J4N38_RS07450 (J4N38_07390)	-	1531180..1531545 (-)	366	WP_239836522.1	CidA/LrgA family protein	-
J4N38_RS07455 (J4N38_07395)	sbcB	1531689..1533113 (-)	1425	WP_252036489.1	exodeoxyribonuclease I	Machinery gene
J4N38_RS07460 (J4N38_07400)	-	1533253..1534626 (-)	1374	WP_252036490.1	L-cystine transporter	-
J4N38_RS07465 (J4N38_07405)	-	1534818..1535504 (-)	687	WP_252036491.1	NAD(P)H-binding protein	-
J4N38_RS07470 (J4N38_07410)	-	1536035..1536646 (+)	612	WP_239875700.1	flavin reductase family protein	-
J4N38_RS07475 (J4N38_07415)	cobT	1536653..1537681 (+)	1029	WP_252036492.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54898.26 Da
• Isoelectric Point: 4.9135

>NTDB_id=548459 J4N38_RS07455 WP_252036489.1 1531689..1533113(-) (sbcB) [Vibrio sp. SCSIO 43145]
MQREHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQVAESKGLPEP
EFIAKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGINWPENEEGFI
SFKLEHLSVANGIEHANAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNDLVDIVKMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQRPEIREKLNSLYSIEREYEKNDDVDTMLYDGFFSPADKTSMAIIRETDPENLSALDISFNDE
RIAPLLFRYRARHFPWTLDESEQQKWAAHCREYFESRIEDYMLNLENLVHEYESDEKKIAILKSVYQYVQKRVS

Nucleotide

• Length: 1425 bp

>NTDB_id=548459 J4N38_RS07455 WP_252036489.1 1531689..1533113(-) (sbcB) [Vibrio sp. SCSIO 43145]
ATGCAACGAGAGCATCAACCTACGTTTTTTTTCTTCGATTATGAGACGTGGGGAACCAGCCCAGCAAAAGACAGACCGTC
TCAGTTTGCGGGAGTACGTACCGATATGGACTTCAATATCATAGGTGAACCTCTTGTTATCTACTGCCAACCGCCCTCAG
ATTATCTTCCTTCACCAGAAGCTGCGCTGATCACAGGTATTACACCTCAAGTTGCGGAATCGAAAGGCCTGCCAGAGCCT
GAGTTTATCGCCAAAATTCATGAGCAATTATCCACCCCCAACACCATCAACTTAGGTTACAACAGCATTCGATTTGATGA
CGAAGTGACTCGATACACCTGTTACCGGAATTTCATCGATCCATATGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ACTTACTTGATGTGATGAGAGCTTGTTATGCTCTTCGCCCAGAAGGCATCAATTGGCCAGAAAATGAAGAAGGCTTCATC
AGTTTTAAGCTGGAACACTTATCCGTTGCAAATGGCATTGAACACGCGAATGCACACGATGCGATGGCCGATGTTATCGC
CACCATTGAGATGGCGAAAAAGGTCAAAGCTGCGCAACCAAAGCTTTTCGATTACTTCCTGAGTATGCGCCACAAGCGTA
AACTCAATGATCTTGTCGATATCGTAAAGATGACACCGCTTATGCACGTATCGGGTATGTTGGGGCGTGAATGCAATTAT
ACTAGCTGGGTAGTTCCGGTCGCTTGGCACCCAACCAATCAAAACGCAGTCATTGTGGTTGATTTGGCGAAAGATCCTCA
GCCGTTGTTGGATTTAGATGTAGAACAGCTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCACCTCAACAAGTGCCCTATTTTGGCCCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAGTGCTTACAAAACCTTGAGCGACTTAGACAACGCCCAGAAATAAGAGAAAAACTCAA
TTCGCTATACAGTATCGAACGAGAATACGAAAAGAACGATGATGTCGATACCATGCTTTACGATGGTTTTTTCTCTCCAG
CTGATAAAACATCAATGGCAATAATCCGCGAAACGGATCCGGAGAATCTATCCGCTCTAGATATCTCATTCAATGATGAG
CGAATAGCCCCACTTTTATTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGACGAGAGTGAGCAACAAAAATGGGC
GGCACATTGCCGTGAGTACTTTGAAAGCCGAATTGAAGATTACATGTTGAATTTGGAAAACTTAGTTCACGAGTATGAAA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTCCAAAAGCGAGTATCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.769	99.367	0.783