Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   J4N37_RS18255 Genome accession   NZ_CP071856
Coordinates   470986..472083 (-) Length   365 a.a.
NCBI ID   WP_252043036.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 465986..477083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS18240 (J4N37_18105) - 466539..467483 (+) 945 WP_252043033.1 DMT family transporter -
  J4N37_RS18245 (J4N37_18110) - 467619..468281 (+) 663 WP_182025519.1 PilZ domain-containing protein -
  J4N37_RS18250 (J4N37_18115) luxQ 468401..470986 (-) 2586 WP_252043035.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  J4N37_RS18255 (J4N37_18120) luxP 470986..472083 (-) 1098 WP_252043036.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  J4N37_RS18260 (J4N37_18125) - 472307..472612 (-) 306 WP_182025522.1 GIY-YIG nuclease family protein -
  J4N37_RS18265 (J4N37_18130) - 472609..473262 (-) 654 WP_252043037.1 YceH family protein -
  J4N37_RS18270 (J4N37_18135) - 473356..473559 (-) 204 WP_010451278.1 hypothetical protein -
  J4N37_RS18275 (J4N37_18140) - 473797..474111 (+) 315 WP_005453573.1 DUF496 family protein -
  J4N37_RS18280 (J4N37_18145) - 474235..475572 (+) 1338 WP_010451276.1 MATE family efflux transporter -
  J4N37_RS18285 (J4N37_18150) - 475637..476629 (-) 993 WP_252043038.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41709.14 Da        Isoelectric Point: 5.5580

>NTDB_id=548442 J4N37_RS18255 WP_252043036.1 470986..472083(-) (luxP) [Vibrio sp. SCSIO 43153]
MKKALIFSLFSLIGVSSNAYSTQVLDGYWAYQEYLEQYPNQRALTEKLGDAVRNYPVPLKTEQRHPLKISVVYPGQQVSD
YWVRNIEAFEKRLDKLKISYQINQVFTRPNADIKQQSMSLMEALKSKSDYLIFTLDTTRHRKFIEHVLDSSETKLILQNI
TTPVREWEKRQPFLYVGFDHAEGSRALAKEFGKRFQKESKFSVLYFSEGYISDVRGDTFIEQVTRDNGFALESAFYTKAT
KSSGYQAAKLSLEKYPDIDFMYACSTDVALGAAEALDELGRDDIMINGWGGGSAELNAIQRGQLDFTVMRMNDDTGIAMA
EAIKWDLEGQSVPTVFSGDFEVVTKSDAPERIEQLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=548442 J4N37_RS18255 WP_252043036.1 470986..472083(-) (luxP) [Vibrio sp. SCSIO 43153]
ATGAAAAAAGCGCTTATATTTTCGCTATTCTCCTTAATTGGTGTTTCTTCAAACGCCTACTCAACCCAGGTACTAGACGG
GTACTGGGCATATCAGGAGTATTTAGAACAATATCCAAACCAGCGAGCTCTCACTGAAAAGTTGGGGGATGCTGTTAGAA
ATTATCCGGTTCCGCTCAAAACAGAGCAACGACACCCTCTCAAAATATCGGTTGTTTATCCTGGGCAACAAGTCTCTGAT
TACTGGGTGAGAAATATTGAAGCTTTTGAGAAAAGGCTAGATAAGCTGAAGATTAGCTACCAGATTAACCAGGTTTTTAC
GCGGCCAAATGCTGATATCAAGCAGCAAAGCATGTCATTAATGGAAGCTCTCAAGAGTAAATCTGACTATTTGATTTTTA
CGCTTGATACGACTCGCCATCGTAAATTTATTGAGCATGTTCTAGACTCATCAGAAACCAAACTCATTTTGCAGAACATC
ACCACACCAGTGAGAGAGTGGGAGAAAAGGCAGCCATTTCTCTATGTTGGTTTTGATCATGCTGAAGGGAGTCGTGCACT
AGCCAAAGAGTTTGGAAAACGATTCCAAAAAGAGAGTAAATTCAGTGTGTTGTATTTCTCTGAGGGATACATTAGTGATG
TCCGAGGGGATACGTTTATTGAGCAGGTTACTCGTGACAATGGTTTTGCCCTGGAGTCGGCCTTCTATACAAAAGCGACA
AAATCTTCCGGGTATCAAGCAGCTAAACTGAGCTTAGAAAAGTACCCTGATATTGACTTTATGTATGCCTGCTCAACCGA
CGTGGCACTTGGTGCAGCTGAAGCGTTAGATGAACTTGGTCGCGATGATATTATGATTAATGGTTGGGGTGGCGGCTCGG
CGGAGCTTAATGCTATTCAACGTGGTCAGCTTGATTTTACTGTTATGCGAATGAATGATGATACAGGTATTGCAATGGCT
GAAGCGATAAAGTGGGATTTAGAAGGACAGTCTGTACCAACCGTATTTTCTGGTGATTTTGAGGTGGTGACTAAGTCAGA
CGCACCTGAACGAATTGAACAACTCAAGAAACGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.462

99.726

0.633