Detailed information NTG0548422

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J4N37_RS13330
• Genome accession: NZ_CP071855
• Coordinates: 2805490..2806476 (-)
• Length: 328 a.a.
• NCBI ID: WP_010450244.1
• Uniprot ID: A0A2K7SP11
• Organism: Vibrio sp. SCSIO 43153
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2800490..2811476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N37_RS13315 (J4N37_13185)	recA	2801028..2802071 (-)	1044	WP_010450238.1	recombinase RecA	Machinery gene
J4N37_RS13320 (J4N37_13190)	pncC	2802272..2802754 (-)	483	WP_252041155.1	nicotinamide-nucleotide amidase	-
J4N37_RS13325 (J4N37_13195)	mutS	2802840..2805401 (+)	2562	WP_252041157.1	DNA mismatch repair protein MutS	-
J4N37_RS13330 (J4N37_13200)	rpoS	2805490..2806476 (-)	987	WP_010450244.1	RNA polymerase sigma factor RpoS	Regulator
J4N37_RS13335 (J4N37_13205)	nlpD	2806557..2807468 (-)	912	WP_252041158.1	murein hydrolase activator NlpD	-
J4N37_RS13340 (J4N37_13210)	-	2807483..2808109 (-)	627	WP_010450248.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J4N37_RS13345 (J4N37_13215)	surE	2808109..2808885 (-)	777	WP_252041160.1	5'/3'-nucleotidase SurE	-
J4N37_RS13350 (J4N37_13220)	truD	2808885..2809928 (-)	1044	WP_252041162.1	tRNA pseudouridine(13) synthase TruD	-
J4N37_RS13355 (J4N37_13225)	ispF	2809974..2810450 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J4N37_RS13360 (J4N37_13230)	ispD	2810465..2811175 (-)	711	WP_071235293.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J4N37_RS13365 (J4N37_13235)	ftsB	2811177..2811458 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37560.57 Da
• Isoelectric Point: 4.8400

>NTDB_id=548422 J4N37_RS13330 WP_010450244.1 2805490..2806476(-) (rpoS) [Vibrio sp. SCSIO 43153]
MSISNTVTKVEEFDYDDAAVGRINNELVKSPSKKEKSSQREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=548422 J4N37_RS13330 WP_010450244.1 2805490..2806476(-) (rpoS) [Vibrio sp. SCSIO 43153]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTATGACGATGCAGCAGTAGGCCGCATTAATAACGAACT
TGTAAAATCACCATCCAAAAAAGAGAAGAGCTCGCAAAGAGAGGAATTCGATGCGAGTAATAAGAGCTTAGATGCAACAC
AGCTTTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACAGCAGAAGAAGAAGTACTTTATGCTCGACGTGCATTGCGT
GGCGATGAAGCTGCTCGTAAACGTATGATCGAAAGTAACTTGCGTCTGGTAGTGAAGATCTCTCGCCGCTACAGCAATCG
TGGTCTTGCACTTCTTGATCTCATCGAAGAAGGCAACCTAGGTTTGATCCGTGCGGTAGAGAAATTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCAACGTGGTGGATCCGCCAAACGATCGAGCGTGCGTTGATGAACCAAACTCGTACCATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACCGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGCTAGATATCCCGGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTA
TTAGTTCTGTTGATACACCAATTGGTGGTGACGGCGAGAAAGCGCTGCTGGATATTATTCCTGATGCCAACAATTCAGAT
CCTGAAGTTTCCACTCAGGACGACGACATTAAATCTTCATTGATCCATTGGTTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTTGCACGTCGGTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAAGTGGAAGGCTTACGTCGACTACGTGAGATCTTGATTAAACAAGGTCTGAACATGGAA
AACTTGTTCAACGTAGAAGATGATTAG

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2K7SP11

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.226	100	0.863