Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J4N37_RS13195 Genome accession   NZ_CP071855
Coordinates   2781914..2782432 (-) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio sp. SCSIO 43153     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2776914..2787432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS13170 (J4N37_13040) rimM 2776968..2777516 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  J4N37_RS13175 (J4N37_13045) rpsP 2777544..2777792 (-) 249 WP_005438039.1 30S ribosomal protein S16 -
  J4N37_RS13180 (J4N37_13050) ffh 2778003..2779385 (-) 1383 WP_005446242.1 signal recognition particle protein -
  J4N37_RS13185 (J4N37_13055) - 2779599..2780393 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  J4N37_RS13190 (J4N37_13060) - 2780548..2781822 (+) 1275 WP_005446238.1 CNNM domain-containing protein -
  J4N37_RS13195 (J4N37_13065) luxS 2781914..2782432 (-) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  J4N37_RS13200 (J4N37_13070) - 2782519..2783082 (-) 564 WP_005448430.1 hypothetical protein -
  J4N37_RS13205 (J4N37_13075) gshA 2783144..2784712 (-) 1569 WP_252041147.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=548419 J4N37_RS13195 WP_005448429.1 2781914..2782432(-) (luxS) [Vibrio sp. SCSIO 43153]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=548419 J4N37_RS13195 WP_005448429.1 2781914..2782432(-) (luxS) [Vibrio sp. SCSIO 43153]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855