Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J4N37_RS09620 Genome accession   NZ_CP071855
Coordinates   1976927..1978348 (+) Length   473 a.a.
NCBI ID   WP_252040738.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1971927..1983348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS09595 (J4N37_09460) cobU 1972428..1972961 (-) 534 WP_252040732.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  J4N37_RS09600 (J4N37_09465) - 1972958..1973764 (-) 807 WP_252040734.1 adenosylcobinamide-GDP ribazoletransferase -
  J4N37_RS09605 (J4N37_09470) cobT 1973764..1974807 (-) 1044 WP_252040736.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  J4N37_RS09610 (J4N37_09475) - 1974827..1975438 (-) 612 WP_010448705.1 flavin reductase family protein -
  J4N37_RS09615 (J4N37_09480) - 1976101..1976796 (+) 696 WP_010448704.1 NAD(P)H-binding protein -
  J4N37_RS09620 (J4N37_09485) sbcB 1976927..1978348 (+) 1422 WP_252040738.1 exodeoxyribonuclease I Machinery gene
  J4N37_RS09625 (J4N37_09490) - 1978407..1978781 (+) 375 WP_010448702.1 CidA/LrgA family protein -
  J4N37_RS09630 (J4N37_09495) - 1978783..1979460 (+) 678 WP_010448701.1 LrgB family protein -
  J4N37_RS09635 (J4N37_09500) cdd 1979726..1980613 (+) 888 WP_252040740.1 cytidine deaminase -
  J4N37_RS09640 (J4N37_09505) - 1980726..1981739 (+) 1014 WP_252040496.1 IS110 family transposase -
  J4N37_RS09645 (J4N37_09510) purT 1982078..1983253 (+) 1176 WP_071236206.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54608.84 Da        Isoelectric Point: 4.9230

>NTDB_id=548411 J4N37_RS09620 WP_252040738.1 1976927..1978348(+) (sbcB) [Vibrio sp. SCSIO 43153]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKIKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPLKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLTNLALLRQHPEIREKLINLFSIEREYEKSDDVDTQLYDGFFSPADRAAMDIIRETDPTNLAALDIEFDDKR
IKPLLFRYRARHYSSTLDDQEQRRWAHHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=548411 J4N37_RS09620 WP_252040738.1 1976927..1978348(+) (sbcB) [Vibrio sp. SCSIO 43153]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCCGGCGTCCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGCCCACCCGCTG
ATTATCTTCCTTCACCCGAAGCAGCTTTGATCACTGGCATTACACCACAAAAAGCGATGCAAGAAGGTCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAACCAAATACTACTAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATTTACTTGACGTCATGCGCGCGTGTCACGCCCTCCGTCCTGAAGGCGTGGAATGGCCAGAAAATGATGAAGGTTTCCCG
AGTTTCAAACTTGAACATTTATCTGTGGCAAATGGCATCGAACACAGCAACGCCCACGATGCGATGGCAGACGTGATTGC
AACAATTGAGATGGCGAAAAAAATCAAAGCGGCTCAACCTAAGTTGTTTGATTACTTCTTCTCTATGCGTAATAAGCGCA
AGCTTAACGAACTGGTCGATATCGTTAACATGACGCCATTGATGCACGTATCTGGGATGTTGGGACGTGAATGCCAGTAC
ACCAGCTGGATTGTGCCTGTTGCTTGGCACCCAACCAACAACAATGCCGTTATCACTATTGATTTGGCAAAAGATCCACA
GCCAATTCTTGAGCTTTCCGCTGAAGAGTTAAAAGAGCGTTTGTACACCAAACGTGATGAGTTGGGTGACTTACTCCCTG
TACCATTGAAGCTCGTGCATCTGAACAAGTGCCCTATTCTAGCGCCAGCGAAAACACTCACTGCTGAGAATGCAGAATCT
ATTGGTATTGACCGTCAGCAATGTCTAACTAACCTCGCTTTGTTACGTCAACACCCAGAAATTCGTGAGAAACTCATTAA
CCTATTCTCTATTGAGCGTGAGTACGAAAAGAGTGATGATGTAGATACGCAACTTTACGACGGTTTTTTCTCGCCTGCTG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGACCCAACTAACCTAGCTGCACTGGATATTGAATTTGATGACAAGCGC
ATCAAACCGTTGCTGTTTCGTTACCGTGCTCGTCACTACTCAAGCACACTAGATGACCAAGAGCAAAGACGCTGGGCACA
TCACTGTCGTGAAGTCTTTGAAAGCCAGATTGAAGAGTATATGCTTAATTTAGAGAACTTAGTTCACGAACATGAAAGTG
ACGAAAAAAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791