Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LSP18_RS29510 Genome accession   NZ_CP089063
Coordinates   6314594..6315934 (-) Length   446 a.a.
NCBI ID   WP_116816838.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6309594..6320934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP18_RS29475 (LSP18_29730) thiS 6309828..6310028 (-) 201 WP_003084514.1 sulfur carrier protein ThiS -
  LSP18_RS29480 (LSP18_29735) - 6310131..6310508 (-) 378 WP_003084513.1 DUF423 domain-containing protein -
  LSP18_RS29485 (LSP18_29740) mtgA 6310545..6311276 (+) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LSP18_RS29490 (LSP18_29745) - 6311281..6311886 (-) 606 WP_003084511.1 hypothetical protein -
  LSP18_RS29495 (LSP18_29750) rpoH 6311951..6312805 (-) 855 WP_033946247.1 RNA polymerase sigma factor RpoH -
  LSP18_RS29500 (LSP18_29755) ftsX 6312919..6313926 (-) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  LSP18_RS29505 (LSP18_29760) ftsE 6313926..6314597 (-) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  LSP18_RS29510 (LSP18_29765) pilA 6314594..6315934 (-) 1341 WP_116816838.1 signal recognition particle-docking protein FtsY Machinery gene
  LSP18_RS29515 (LSP18_29770) - 6316055..6317452 (+) 1398 WP_003084498.1 pitrilysin family protein -
  LSP18_RS29520 (LSP18_29775) - 6317445..6318932 (+) 1488 WP_057390682.1 pitrilysin family protein -
  LSP18_RS29525 (LSP18_29780) rsmD 6318932..6319528 (+) 597 WP_034077501.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LSP18_RS29530 (LSP18_29785) - 6319531..6320097 (+) 567 WP_003084491.1 hypothetical protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 47418.82 Da        Isoelectric Point: 4.6728

>NTDB_id=548405 LSP18_RS29510 WP_116816838.1 6314594..6315934(-) (pilA) [Pseudomonas aeruginosa strain UNC_PaerCF37]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPQAPVAQPEPILAAEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGMA
SLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREP
YVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKA
RGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAK
GGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=548405 LSP18_RS29510 WP_116816838.1 6314594..6315934(-) (pilA) [Pseudomonas aeruginosa strain UNC_PaerCF37]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCCAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCGCCGGCAGTCAGCGAGC
CGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCC
AGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGG
CGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGT
ACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCC
TATGTGATCCTGGTGGTTGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGA
GGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCA
ACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCC
CGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGT
GCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACG
CCATCAATCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAG
GGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCT
CCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(156-221)

SRP54-type protein, GTPase domain (SRP54)

(241-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.897

95.964

0.46