Detailed information NTG0548401

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: J4N37_RS01220
• Genome accession: NZ_CP071855
• Coordinates: 265469..266476 (-)
• Length: 335 a.a.
• NCBI ID: WP_252041528.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43153
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 260469..271476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N37_RS01190 (J4N37_01185)	zapB	260490..260732 (+)	243	WP_010445262.1	cell division protein ZapB	-
J4N37_RS01195 (J4N37_01190)	rraA	260796..261320 (-)	525	WP_010445263.1	ribonuclease E activity regulator RraA	-
J4N37_RS01200 (J4N37_01195)	-	261396..262313 (-)	918	WP_010445265.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
J4N37_RS01205 (J4N37_01200)	hslU	262589..263920 (-)	1332	WP_010445268.1	HslU--HslV peptidase ATPase subunit	-
J4N37_RS01210 (J4N37_01205)	hslV	263950..264501 (-)	552	WP_009698878.1	ATP-dependent protease subunit HslV	-
J4N37_RS01215 (J4N37_01210)	ftsN	264791..265336 (-)	546	WP_252041527.1	cell division protein FtsN	-
J4N37_RS01220 (J4N37_01215)	cytR	265469..266476 (-)	1008	WP_252041528.1	DNA-binding transcriptional regulator CytR	Regulator
J4N37_RS01225 (J4N37_01220)	priA	266681..268882 (-)	2202	WP_252041529.1	primosomal protein N'	-
J4N37_RS01230 (J4N37_01225)	rpmE	269180..269398 (+)	219	WP_010445294.1	50S ribosomal protein L31	-
J4N37_RS01235 (J4N37_01230)	rpsJ	269855..270166 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
J4N37_RS01240 (J4N37_01235)	rplC	270181..270810 (+)	630	WP_005435072.1	50S ribosomal protein L3	-
J4N37_RS01245 (J4N37_01240)	rplD	270828..271430 (+)	603	WP_005435074.1	50S ribosomal protein L4	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36862.42 Da
• Isoelectric Point: 6.2459

>NTDB_id=548401 J4N37_RS01220 WP_252041528.1 265469..266476(-) (cytR) [Vibrio sp. SCSIO 43153]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPESAALCQFRQQGYQQALRRAGITKEAQYSIVTDFTFEGGAQAIRKLLELPEPPTA
VFCHCDTMAIGALQEAKRLGLRVPQDISIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide

• Length: 1008 bp

>NTDB_id=548401 J4N37_RS01220 WP_252041528.1 265469..266476(-) (cytR) [Vibrio sp. SCSIO 43153]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTCTCTACCGCAACCGTGTCGCGAGCTCTGATGAATCCGGAAAA
AGTATCATCATCGACACGAAAAAGAGTAGAAGATGCAGTACTTGAAGCTGGCTACTCACCGAATTCATTAGCACGCAACT
TACGTAGAAATGAATCAAAAACCATTGTCACTATAGTTCCCGACATCTGCGATCCGTACTTCTCTGAAATCATTCGTGGT
ATCGAAGATGCAGCAATGGAACATGGCTACCTAGTCCTACTGGGCGACAGTGGTCAACAGAAAAAACGAGAAAGCTCATT
TGTAAACCTCGTCTTTACCAAACAAGCTGATGGCATGCTACTGCTAGGCACCGATTTACCATTCGATGTCAGCAAGCCAG
AACAGAAAAACTTACCGCCGATGGTGATGGCTTGTGAGTTTGCTCCTGAGCTAGAACTGCCAACCGTACACATTGATAAC
CTAACCTCTGCTTTTGAAGCTGTGAACTACCTAACTCAATTAGGCCATAAGCGTATCGCTCAAATCTCTGGTCCAGAGAG
TGCTGCACTATGCCAATTCCGTCAGCAGGGTTACCAACAGGCGTTACGTCGTGCGGGCATTACTAAAGAAGCACAATACA
GTATCGTTACTGACTTCACCTTTGAAGGCGGTGCACAAGCAATCCGTAAACTACTCGAACTACCAGAGCCACCTACCGCT
GTATTCTGTCATTGTGACACCATGGCTATTGGTGCGCTCCAAGAAGCAAAACGCCTAGGATTGAGAGTTCCACAAGACAT
CTCAATTGTTGGGTTTGACGATATCCAATTTGCTCAGTACTGCGATCCACCGTTAACTACCATCTCGCAACCTCGTTATG
AGATCGGTCGCCAAGCCATGCTAATGATGCTAGAGCTGTTAAAAGGTCATGATGTACACTCCGGCTCTCGCTTACTTGAG
ACCAAACTTGTTGTTCGAGGTAGTGCTGCTCCACCACCATTACGCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	94.578	99.104	0.937
cytR	Vibrio cholerae C6706	90.964	99.104	0.901