Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   J4N44_RS20715 Genome accession   NZ_CP071853
Coordinates   828688..829869 (-) Length   393 a.a.
NCBI ID   WP_026000191.1    Uniprot ID   A0A1E3E250
Organism   Vibrio sp. SCSIO 43155     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 823688..834869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N44_RS20700 (J4N44_20625) - 824982..825530 (+) 549 WP_005447141.1 GNAT family N-acetyltransferase -
  J4N44_RS20705 (J4N44_20630) - 825605..826222 (-) 618 WP_252045694.1 HAD family phosphatase -
  J4N44_RS20710 (J4N44_20635) - 826509..828554 (+) 2046 WP_017819191.1 hybrid sensor histidine kinase/response regulator -
  J4N44_RS20715 (J4N44_20640) cqsA 828688..829869 (-) 1182 WP_026000191.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J4N44_RS20720 (J4N44_20645) ylqF 830403..831347 (-) 945 WP_005447133.1 ribosome biogenesis GTPase YlqF -
  J4N44_RS20725 (J4N44_20650) - 831669..832655 (-) 987 WP_252045695.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43694.80 Da        Isoelectric Point: 6.4464

>NTDB_id=548395 J4N44_RS20715 WP_026000191.1 828688..829869(-) (cqsA) [Vibrio sp. SCSIO 43155]
MSDKLKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQSGAVVMQSNDYLSLSHNQLIQKAHRDAITEHDDNVVMS
AIFLQDDTSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAHAFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGAGLVKALGLTDQVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKRTLLFNRAKELRTGLKQIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDVDHVLTACQEAFNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=548395 J4N44_RS20715 WP_026000191.1 828688..829869(-) (cqsA) [Vibrio sp. SCSIO 43155]
ATGAGTGATAAACTGAAAACGAAACCTCTTCCTTCTTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGACTTGATCGA
ACAAAACGAGAACCAGAAGCACTTGGTTTTGGGTAAGCGACCACAATCCGGAGCAGTGGTCATGCAAAGCAACGACTACT
TATCGTTATCCCACAACCAACTGATTCAAAAGGCACATCGTGATGCAATTACCGAGCATGACGACAACGTAGTAATGTCT
GCAATCTTCCTGCAAGATGATACTTCCAAGCCTGCATTTGAAACCCAACTCGCCGATTACGTGGGAATGGGAAGTTGCTT
GCTCTCACAATCAGGATGGGCGGCAAACATCGGGTTGTTGCAAACGATTTGCCCACCAAATACGCCCGTCTATATCGACT
TTTTTGCGCATATGTCGTTATGGGAAGGTATTCGAGCAGCGGGAGCACACGCGCATGCATTTATGCACAACAATATGAAC
CACTTGCGTAAACAGATCCAACGTCATGGCTCCGGTGTGATTGTTGTCGATTCGGTCTATAGCACGATTGGTACTATCGC
CCCACTTCACGACATCTACGAAATGGCACGTGAATTTGATTGTGCATTGGTCGTCGATGAATCCCACTCACTTGGAACTC
ACGGTCCAAATGGCGCTGGTCTTGTGAAAGCGTTAGGGTTAACCGATCAAGTTGATTTCATTACGGTAAGTTTGGCTAAG
ACATTCGCATACCGTGCGGGGGCTATTCTTGGTCCTGAGAAGCTGGCTAAGACACTCCCATTTGTCGCGTATCCAGCGAT
TTTTAGCTCGACGGTATTGCCGCAAGAAGTGATTCGCTTAGAAAAAACGCTTGAGGTGATTAAGGGAGCTGACGATAAAC
GAACCTTACTGTTCAACCGAGCTAAAGAGCTAAGAACAGGATTAAAACAAATTGGCTTTAATATCCGTAGTGAATCTCAA
ATTGTCGCTTTGGAGTGCGGTAGCGAGAGAAATACGGAACGTGTACGTGACTTTCTTGAAGAACGTAATGTGTTTGGTGC
AGTATTCTGTCGCCCAGCAACAGGTAAGAACAAAAACATCATCCGATTTTCAATCAATGCAGATATGACTTCTCGCGATG
TGGACCACGTACTTACCGCTTGTCAGGAAGCATTTAACCATCCAGAACTAGAATTCGCATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3E250

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567