Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J4N44_RS13960 Genome accession   NZ_CP071852
Coordinates   2949577..2950095 (-) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio sp. SCSIO 43155     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2944577..2955095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N44_RS13935 (J4N44_13865) rimM 2944629..2945177 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  J4N44_RS13940 (J4N44_13870) rpsP 2945206..2945454 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  J4N44_RS13945 (J4N44_13875) ffh 2945665..2947047 (-) 1383 WP_005446242.1 signal recognition particle protein -
  J4N44_RS13950 (J4N44_13880) - 2947261..2948055 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  J4N44_RS13955 (J4N44_13885) - 2948210..2949484 (+) 1275 WP_047512919.1 CNNM domain-containing protein -
  J4N44_RS13960 (J4N44_13890) luxS 2949577..2950095 (-) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  J4N44_RS13965 (J4N44_13895) - 2950182..2950787 (-) 606 WP_029790340.1 hypothetical protein -
  J4N44_RS13970 (J4N44_13900) gshA 2950807..2952375 (-) 1569 WP_017817672.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=548373 J4N44_RS13960 WP_005448429.1 2949577..2950095(-) (luxS) [Vibrio sp. SCSIO 43155]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=548373 J4N44_RS13960 WP_005448429.1 2949577..2950095(-) (luxS) [Vibrio sp. SCSIO 43155]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855