Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J4N44_RS09195 Genome accession   NZ_CP071852
Coordinates   2049143..2050564 (+) Length   473 a.a.
NCBI ID   WP_005445536.1    Uniprot ID   A0A9X3ML51
Organism   Vibrio sp. SCSIO 43155     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2044143..2055564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N44_RS09175 (J4N44_09160) - 2044468..2045079 (-) 612 WP_252044314.1 flavin reductase family protein -
  J4N44_RS09180 (J4N44_09165) - 2045815..2046510 (+) 696 WP_017818004.1 NAD(P)H-binding protein -
  J4N44_RS09185 (J4N44_09170) - 2046706..2048079 (+) 1374 WP_053050855.1 L-cystine transporter -
  J4N44_RS09190 (J4N44_09175) - 2048301..2048981 (+) 681 WP_252044317.1 DUF1826 domain-containing protein -
  J4N44_RS09195 (J4N44_09180) sbcB 2049143..2050564 (+) 1422 WP_005445536.1 exodeoxyribonuclease I Machinery gene
  J4N44_RS09200 (J4N44_09185) - 2050623..2050997 (+) 375 WP_005445537.1 CidA/LrgA family protein -
  J4N44_RS09205 (J4N44_09190) - 2050999..2051676 (+) 678 WP_005445538.1 LrgB family protein -
  J4N44_RS09210 (J4N44_09195) cdd 2051932..2052819 (+) 888 WP_252044319.1 cytidine deaminase -
  J4N44_RS09215 (J4N44_09200) purT 2052968..2054143 (+) 1176 WP_042606220.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  J4N44_RS09220 (J4N44_09205) - 2054220..2054870 (-) 651 WP_252044321.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54569.91 Da        Isoelectric Point: 4.9808

>NTDB_id=548364 J4N44_RS09195 WP_005445536.1 2049143..2050564(+) (sbcB) [Vibrio sp. SCSIO 43155]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=548364 J4N44_RS09195 WP_005445536.1 2049143..2050564(+) (sbcB) [Vibrio sp. SCSIO 43155]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCCGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCGCGATGGG
ATTTGCTTGACGTGATGCGCGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAGTGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTTGAGCATTTATCCGTGGCTAACGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGATTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793