Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   J4N45_RS22670 Genome accession   NZ_CP071851
Coordinates   922856..923929 (+) Length   357 a.a.
NCBI ID   WP_252017226.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 917856..928929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS22635 (J4N45_22650) - 919156..919734 (+) 579 WP_252017165.1 SOS response-associated peptidase family protein -
  J4N45_RS22640 (J4N45_22655) - 919756..920109 (-) 354 WP_128650100.1 DUF1428 domain-containing protein -
  J4N45_RS22645 (J4N45_22660) - 920436..920684 (-) 249 WP_042471521.1 YgjV family protein -
  J4N45_RS22650 (J4N45_22665) - 920975..921292 (-) 318 WP_006072802.1 DUF496 family protein -
  J4N45_RS22655 (J4N45_22670) - 921483..921695 (+) 213 WP_252017166.1 hypothetical protein -
  J4N45_RS22660 (J4N45_22675) - 921741..922406 (+) 666 WP_252017167.1 YceH family protein -
  J4N45_RS22665 (J4N45_22680) - 922463..922756 (+) 294 WP_252017168.1 GIY-YIG nuclease family protein -
  J4N45_RS22670 (J4N45_22685) luxP 922856..923929 (+) 1074 WP_252017226.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  J4N45_RS22675 (J4N45_22690) luxQ 923949..926522 (+) 2574 WP_353505894.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  J4N45_RS22680 (J4N45_22695) - 926599..927858 (-) 1260 WP_252017169.1 hydroxymethylglutaryl-CoA reductase -
  J4N45_RS22685 (J4N45_22700) - 928019..928180 (-) 162 WP_234496816.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 40296.26 Da        Isoelectric Point: 4.8014

>NTDB_id=548350 J4N45_RS22670 WP_252017226.1 922856..923929(+) (luxP) [Vibrio sp. SCSIO 43140]
MLLGTPVLTTHANTFLSDYWNYQHYLEAHPEQKALTDELQLAVSKGPMPLSVKQSKPITISVVYPGQQVSDYWVRNIKAF
ETRLEELGVEYELNQVFTRPNDDFRQQSVSLMEAVKNKSGYLIFTLDTSRHRKFIEHVLHATDTKLILQNITTPLKSWSE
NPPFMYVGFDHVKGSLLLADYFKERFNGDKADYSVLYFSEGYVSDARGGTFIQEMDKLNGFSLATSYYTKASRDSGREAA
LNTLKQHPNVNFIYACSTDVALGAADALNELDRKDVVVNGWGGGSAELEAIQNGELDVTVMRMNDDTGVAMAEAIKWDLE
DKEVPLVYSGNFELVTSTDSAEKIEALKERAFRYSDR

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=548350 J4N45_RS22670 WP_252017226.1 922856..923929(+) (luxP) [Vibrio sp. SCSIO 43140]
ATGTTGCTGGGAACGCCTGTACTAACAACCCATGCAAATACTTTCCTGTCTGATTATTGGAACTATCAACATTATTTAGA
AGCTCATCCTGAGCAAAAGGCCTTAACTGATGAACTGCAATTAGCAGTGTCTAAAGGTCCTATGCCGCTCTCTGTAAAAC
AAAGTAAACCAATCACTATATCCGTGGTTTATCCTGGCCAACAAGTGTCTGATTATTGGGTTCGAAACATCAAAGCGTTT
GAAACCAGATTAGAAGAACTGGGTGTGGAGTATGAGCTGAACCAAGTCTTCACAAGACCCAATGATGATTTTAGACAGCA
AAGTGTGTCATTGATGGAAGCGGTCAAAAACAAGTCCGGTTATTTGATCTTTACGCTTGATACCTCTCGGCACCGTAAAT
TCATCGAACACGTTCTGCATGCGACCGATACTAAGCTCATACTGCAAAATATCACCACGCCTCTAAAGAGTTGGTCAGAG
AATCCTCCGTTCATGTATGTTGGATTTGACCACGTGAAAGGCAGTCTATTGCTCGCTGATTACTTCAAGGAGCGTTTTAA
TGGCGACAAAGCAGATTACTCAGTGCTGTATTTTTCAGAAGGCTACGTGAGTGACGCTCGAGGGGGGACGTTTATTCAAG
AGATGGACAAGCTTAATGGTTTTTCCTTAGCTACGTCATACTACACCAAAGCGAGTCGAGACAGTGGCCGTGAAGCAGCA
TTGAATACCTTAAAACAACATCCAAACGTGAATTTTATCTACGCATGCTCTACCGACGTAGCTCTTGGAGCAGCCGATGC
CTTGAACGAATTGGATCGTAAAGATGTGGTGGTAAACGGCTGGGGCGGAGGCTCCGCTGAGTTAGAAGCCATTCAAAATG
GTGAACTTGATGTAACCGTCATGAGAATGAATGATGATACAGGAGTAGCGATGGCAGAAGCGATCAAGTGGGATCTAGAA
GATAAGGAAGTGCCTTTAGTGTATTCGGGTAATTTTGAGTTGGTGACAAGTACCGATTCGGCTGAAAAAATCGAGGCTCT
CAAAGAAAGAGCGTTTCGTTATTCAGATCGCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(60-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

66.667

95.798

0.639