Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   J4N45_RS21755 Genome accession   NZ_CP071851
Coordinates   711498..712679 (-) Length   393 a.a.
NCBI ID   WP_252016932.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 706498..717679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS21740 (J4N45_21750) moeA 707086..708321 (-) 1236 WP_252017217.1 molybdopterin molybdotransferase MoeA -
  J4N45_RS21745 (J4N45_21755) folE 708527..709180 (+) 654 WP_042471267.1 GTP cyclohydrolase I FolE -
  J4N45_RS21750 (J4N45_21760) - 709376..711424 (+) 2049 WP_252016929.1 hybrid sensor histidine kinase/response regulator -
  J4N45_RS21755 (J4N45_21765) cqsA 711498..712679 (-) 1182 WP_252016932.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J4N45_RS21760 (J4N45_21770) - 712903..713871 (-) 969 WP_286036918.1 TDT family transporter -
  J4N45_RS21765 (J4N45_21775) clcA 713991..715388 (-) 1398 WP_252016934.1 H(+)/Cl(-) exchange transporter ClcA -
  J4N45_RS21770 (J4N45_21780) - 715929..716927 (+) 999 WP_252016936.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43856.93 Da        Isoelectric Point: 6.5895

>NTDB_id=548349 J4N45_RS21755 WP_252016932.1 711498..712679(-) (cqsA) [Vibrio sp. SCSIO 43140]
MHLTQIKKSLPEFITKKHEHFIADRISSNTENHPVVCGGRPTSSDVVMQTNDYLCLHDHYEIQEAHIQGIRETKESLLMS
GVYLLGEEKESDFESKLARHVGFESCLVAQSGWTANVNLLQAICDKDTNVYVDFFAHASLWEGARIAGAKVHMFMHNNIK
HLKRQISRNGSGIILVDSIYSTVGTVAPLVDLVSLAYEFDCALVVDESHSLGTHGPRGAGLVAELGLTEHVDYITASLAK
TYAYRAGVILANEKTNYCVPMVAFPAIFSSTMLPYELARLSKTHDVIVSSEKRRQTLNKNAQYLNKELRSIGFAIQSESQ
IIGLETGDVENTIKVRNYFEENGVFGSVFAPPATPNNKHILRLSINAMHTKQDLDKVIEVCRSAWLNNDLIFY

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=548349 J4N45_RS21755 WP_252016932.1 711498..712679(-) (cqsA) [Vibrio sp. SCSIO 43140]
ATGCACTTAACTCAGATTAAAAAGTCTCTCCCAGAATTTATTACTAAAAAGCATGAGCATTTTATTGCGGACAGGATCAG
TTCGAATACAGAAAATCATCCTGTTGTTTGTGGCGGTCGACCAACTAGCAGCGATGTTGTAATGCAAACAAATGACTACC
TTTGTCTGCATGACCACTACGAAATTCAAGAAGCTCATATTCAGGGAATACGCGAAACCAAAGAAAGCTTGCTCATGTCC
GGTGTTTATTTGCTGGGCGAAGAAAAAGAAAGTGACTTCGAATCGAAGTTGGCGCGTCATGTTGGGTTCGAAAGCTGCTT
AGTTGCTCAGTCAGGCTGGACTGCCAATGTAAACCTTCTGCAAGCCATCTGTGACAAAGATACAAACGTCTACGTTGATT
TCTTTGCCCATGCTTCATTGTGGGAAGGGGCACGCATTGCCGGGGCCAAGGTGCATATGTTTATGCACAACAATATCAAG
CACCTAAAACGTCAAATATCGAGAAACGGCAGCGGAATCATTCTTGTAGATTCTATTTACAGTACCGTTGGCACGGTTGC
CCCACTGGTGGATCTCGTTTCGCTTGCCTACGAGTTTGATTGCGCCTTGGTCGTTGACGAATCTCATTCGCTAGGAACCC
ATGGTCCACGAGGGGCTGGTCTCGTTGCAGAGCTGGGGCTTACCGAGCATGTTGATTACATTACCGCGAGTCTCGCTAAA
ACATATGCCTATCGCGCTGGTGTTATTTTAGCCAATGAGAAAACCAACTATTGCGTCCCAATGGTCGCTTTTCCGGCAAT
ATTTAGCTCAACAATGCTGCCTTACGAACTCGCTCGACTAAGCAAAACACACGACGTCATCGTAAGCTCTGAGAAGAGAC
GACAAACACTCAACAAGAACGCTCAATACCTAAATAAGGAACTGCGTTCCATTGGCTTTGCCATTCAAAGTGAATCGCAA
ATCATAGGTTTGGAAACTGGTGATGTGGAAAACACGATTAAAGTAAGAAACTACTTTGAGGAAAACGGTGTGTTTGGCTC
AGTGTTTGCCCCACCAGCGACACCTAACAATAAGCACATACTAAGATTATCCATCAATGCGATGCACACTAAGCAGGATC
TCGATAAAGTCATAGAGGTTTGCCGATCAGCTTGGCTGAACAACGACCTTATCTTCTATTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(76-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

53.627

98.219

0.527