Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   J4N45_RS17290 Genome accession   NZ_CP071850
Coordinates   3632864..3633871 (+) Length   335 a.a.
NCBI ID   WP_234495057.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627864..3638871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS17275 (J4N45_17285) - 3628299..3629558 (-) 1260 WP_042477146.1 malic enzyme-like NAD(P)-binding protein -
  J4N45_RS17280 (J4N45_17290) rpmE 3629890..3630108 (-) 219 WP_006071169.1 50S ribosomal protein L31 -
  J4N45_RS17285 (J4N45_17295) priA 3630392..3632593 (+) 2202 WP_252012691.1 primosomal protein N' -
  J4N45_RS17290 (J4N45_17300) cytR 3632864..3633871 (+) 1008 WP_234495057.1 DNA-binding transcriptional regulator CytR Regulator
  J4N45_RS17295 (J4N45_17305) - 3633953..3634498 (+) 546 WP_252012693.1 SPOR domain-containing protein -
  J4N45_RS17300 (J4N45_17310) hslV 3634839..3635381 (+) 543 WP_252012694.1 ATP-dependent protease subunit HslV -
  J4N45_RS17305 (J4N45_17315) hslU 3635595..3636929 (+) 1335 WP_252012695.1 HslU--HslV peptidase ATPase subunit -
  J4N45_RS17310 (J4N45_17320) - 3637647..3637937 (-) 291 WP_252012696.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36833.47 Da        Isoelectric Point: 6.1431

>NTDB_id=548342 J4N45_RS17290 WP_234495057.1 3632864..3633871(+) (cytR) [Vibrio sp. SCSIO 43140]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQSKKRETSFVNLVFTKQADGMLLLGTDLPFDISKPEQKNLPPIVMACEFAPELELPTVHIDN
LTSAFEAVNYLSNLGHKRIAQIAGPDSAFLCRFRQQGYQQALRRAGLPMNPAYTVKGDFTFEAGARLVRTLLALPEPPTA
IFCHNDVMAIGAMQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTVSQPRYEIGRQAMYMMLEVLKGADVRAGSRLLD
TELVIRDSAAPPRIL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=548342 J4N45_RS17290 WP_234495057.1 3632864..3633871(+) (cytR) [Vibrio sp. SCSIO 43140]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTCTCTACGGCTACGGTATCAAGAGCTCTGATGAACCCAGAAAA
AGTCTCATCATCTACTCGTAAGCGAGTGGAAGATGCGGTTTTAGAAGCTGGCTATTCTCCAAATTCACTCGCACGCAATC
TTCGCAGAAATGAATCTAAAACCATTGTGACGATTGTACCTGACATCTGTGACCCATATTTCTCCGAGATCATTCGTGGT
ATTGAAGATGCCGCTATGGAGCATGGTTATCTCGTATTACTGGGGGACAGCGGTCAGTCAAAAAAACGTGAAACCTCGTT
TGTGAACCTCGTATTCACCAAACAAGCTGATGGTATGTTGCTGTTGGGAACGGATCTTCCTTTCGACATCAGTAAGCCAG
AGCAAAAGAACCTGCCACCAATTGTCATGGCGTGTGAATTTGCGCCTGAGCTTGAACTGCCAACCGTTCACATTGATAAC
CTGACCTCAGCGTTTGAAGCGGTGAACTATCTATCAAACCTTGGGCATAAGCGAATCGCTCAGATTGCTGGTCCAGACTC
AGCATTCTTATGCCGCTTTAGACAGCAAGGCTACCAGCAAGCCCTGCGCCGTGCTGGCCTGCCAATGAATCCCGCGTACA
CCGTGAAGGGTGATTTCACCTTTGAGGCTGGCGCTAGACTTGTTCGCACCCTCTTGGCACTGCCAGAGCCACCAACTGCA
ATATTCTGTCACAATGATGTGATGGCGATTGGTGCCATGCAAGAGGCGAAGAAATTAGGGCTGCGTGTTCCTCAAGATCT
CTCTGTCGTCGGCTTCGATGATATCCAATTTGCACAGTACTGCGATCCACCGCTAACGACGGTCTCACAGCCTCGCTATG
AGATTGGACGACAAGCCATGTACATGATGCTCGAAGTGCTAAAAGGTGCTGATGTAAGAGCAGGCTCTCGTCTTCTGGAT
ACGGAACTTGTGATCCGCGACAGTGCGGCTCCTCCAAGAATCCTGTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

88.855

99.104

0.881
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.403

0.869