Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J4N45_RS16635 Genome accession   NZ_CP071850
Coordinates   3493622..3494140 (-) Length   172 a.a.
NCBI ID   WP_042473253.1    Uniprot ID   A0A090RV94
Organism   Vibrio sp. SCSIO 43140     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3488622..3499140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS16605 (J4N45_16615) - 3489362..3489871 (+) 510 WP_252012609.1 SprT family zinc-dependent metalloprotease -
  J4N45_RS16610 (J4N45_16620) - 3489971..3490648 (+) 678 WP_286036906.1 endonuclease -
  J4N45_RS16615 (J4N45_16625) rsmE 3490728..3491459 (+) 732 WP_252012611.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  J4N45_RS16620 (J4N45_16630) gshB 3491473..3492420 (+) 948 WP_252012612.1 glutathione synthase -
  J4N45_RS16625 (J4N45_16635) - 3492453..3493022 (+) 570 WP_128649352.1 YqgE/AlgH family protein -
  J4N45_RS16630 (J4N45_16640) ruvX 3493088..3493513 (+) 426 WP_234495117.1 Holliday junction resolvase RuvX -
  J4N45_RS16635 (J4N45_16645) luxS 3493622..3494140 (-) 519 WP_042473253.1 S-ribosylhomocysteine lyase Regulator
  J4N45_RS16640 (J4N45_16650) gshA 3494300..3495889 (-) 1590 WP_252012613.1 glutamate--cysteine ligase -
  J4N45_RS16645 (J4N45_16655) - 3495995..3498853 (-) 2859 WP_252012614.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19151.96 Da        Isoelectric Point: 4.7277

>NTDB_id=548337 J4N45_RS16635 WP_042473253.1 3493622..3494140(-) (luxS) [Vibrio sp. SCSIO 43140]
MPLLDSFTVDHTKMHAPAVRVAKTMQTPKGDTITVFDLRFTIPNKDILSERGIHTLEHLYAGFMRAHLNGDQVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLNAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKAIAEKIIEAGIQVNKNDELA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=548337 J4N45_RS16635 WP_042473253.1 3493622..3494140(-) (luxS) [Vibrio sp. SCSIO 43140]
ATGCCACTACTGGATAGCTTTACGGTAGACCACACTAAGATGCACGCTCCAGCGGTACGCGTTGCGAAAACAATGCAAAC
CCCTAAAGGCGACACGATTACTGTTTTCGACCTACGTTTTACGATCCCAAACAAAGACATCTTGTCTGAGCGCGGCATTC
ACACGCTAGAGCATCTATATGCCGGCTTCATGCGTGCACATCTAAATGGTGACCAGGTTGAGATCATCGATATCTCTCCA
ATGGGTTGTCGTACTGGTTTTTACATGAGCTTGATAGGTACGCCATCTGAGCAGCAGGTTGCTGACGCTTGGCTAAATGC
AATGCAAGATGTACTGAAAGTCGAGAGCCAGAACAAGATCCCTGAGCTTAACGAGTATCAATGTGGTACTGCAGCAATGC
ACTCACTGGATGAAGCGAAAGCGATCGCAGAGAAGATCATTGAAGCGGGTATTCAAGTGAATAAGAACGATGAGCTTGCA
TTGCCTGAGTCTATGTTGCAAGAGCTGAAAGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090RV94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884