Detailed information NTG0548331

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: J4N45_RS08685
• Genome accession: NZ_CP071850
• Coordinates: 1875230..1876651 (+)
• Length: 473 a.a.
• NCBI ID: WP_252014554.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43140
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1870230..1881651

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N45_RS08670 (J4N45_08680)	-	1870499..1871872 (-)	1374	WP_252014551.1	Na+/H+ antiporter NhaC family protein	-
J4N45_RS08675 (J4N45_08685)	-	1871975..1874053 (-)	2079	WP_252014552.1	EAL domain-containing protein	-
J4N45_RS08680 (J4N45_08690)	-	1874043..1875017 (-)	975	WP_252014553.1	hypothetical protein	-
J4N45_RS08685 (J4N45_08695)	sbcB	1875230..1876651 (+)	1422	WP_252014554.1	exodeoxyribonuclease I	Machinery gene
J4N45_RS08690 (J4N45_08700)	-	1876746..1877111 (+)	366	WP_234495941.1	CidA/LrgA family protein	-
J4N45_RS08695 (J4N45_08705)	-	1877113..1877799 (+)	687	WP_252014555.1	LrgB family protein	-
J4N45_RS08700 (J4N45_08710)	cdd	1877980..1878867 (+)	888	WP_252014556.1	cytidine deaminase	-
J4N45_RS08705 (J4N45_08715)	purT	1879030..1880205 (+)	1176	WP_234495938.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
J4N45_RS08710 (J4N45_08720)	-	1880259..1880615 (-)	357	WP_252014557.1	VOC family protein	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54399.63 Da
• Isoelectric Point: 4.7617

>NTDB_id=548331 J4N45_RS08685 WP_252014554.1 1875230..1876651(+) (sbcB) [Vibrio sp. SCSIO 43140]
MSQHQPTFFFFDYETWGVSPAKDRPCQFAGVRTDSDFNIIGDPLVIYCQPPADYLPSPEAALITGITPQLCQEKGLPEPE
FIAKIHEQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENEEGFTS
FKLEHLSVANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFYSMRTKRKLNELVDIVNMTPLMHVSGMLGKECQYT
SWVVPIAWHPTNQNAVIVADLAKDPQPLLDLDVEALHKRLYTRHDDLAEGELPVPLKLIHLNKCPILAPAKTLTAENAGV
IGIDREQCLKNLALIKQNPEIREKLIGLYGIEREFENDDDVDTQLYSGFFTPADRSAMDIIRDTDPNNLSALDISFSDSR
IEPLLFRYRARHFAWTLDETEQQKWANHCREFFESRIEDYMLNMENLVHEHESDEKKLAILKSVYRYVERLVS

Nucleotide

• Length: 1422 bp

>NTDB_id=548331 J4N45_RS08685 WP_252014554.1 1875230..1876651(+) (sbcB) [Vibrio sp. SCSIO 43140]
ATGTCCCAACACCAACCCACTTTTTTCTTCTTTGATTACGAGACTTGGGGTGTTAGCCCAGCGAAAGACAGACCTTGTCA
ATTTGCGGGTGTAAGGACAGATTCTGACTTTAATATCATTGGCGACCCTTTAGTCATTTATTGCCAGCCACCTGCTGATT
ATCTGCCTTCGCCAGAAGCTGCGCTGATTACCGGAATCACGCCTCAACTTTGTCAGGAAAAAGGGCTTCCAGAGCCTGAA
TTTATCGCGAAGATCCATGAGCAATTAGCGACGCCAAATACCACAAGTCTTGGCTATAACAGTATTCGCTTCGACGATGA
AGTCACTCGATATACCTGCTATCGCAACTTCATCGACCCATATGCATGGAGCTGGCAAAATGGCAATTCACGCTGGGATC
TGCTCGATGTAATGAGAGCCTGCCATGCTCTCCGTCCTGAGGGTATTGAGTGGCCTGAAAACGAGGAAGGCTTTACCAGT
TTCAAGCTAGAGCACCTTTCTGTCGCGAACGGTATTGAGCACGAAAACGCACATGATGCGATGGCTGACGTCATTGCAAC
TATTGAGCTTGCTAAAAAAGTTAAAGCAGCACAGCCTAAGTTGTTCGACTACTTCTACTCAATGCGAACCAAACGCAAAC
TCAATGAGCTGGTAGATATCGTCAATATGACGCCACTTATGCACGTGTCTGGAATGCTCGGTAAAGAGTGCCAATACACG
AGCTGGGTTGTACCAATTGCATGGCACCCAACAAACCAAAATGCAGTGATTGTTGCCGATCTCGCCAAAGATCCTCAACC
GTTACTCGATTTAGATGTCGAAGCACTTCACAAAAGGCTCTACACTAGACACGATGATCTAGCAGAAGGTGAACTGCCCG
TTCCACTTAAACTTATTCATCTAAACAAATGCCCTATTCTTGCTCCAGCTAAAACGCTAACCGCAGAAAATGCAGGTGTG
ATCGGCATCGATAGAGAACAATGTTTGAAGAATCTTGCCCTCATCAAGCAGAACCCAGAAATACGAGAAAAGCTAATTGG
GCTATATGGCATTGAAAGAGAGTTTGAAAACGATGATGACGTTGATACTCAGCTCTACAGTGGTTTCTTTACACCTGCAG
ATCGCAGTGCGATGGATATTATTCGAGATACCGACCCGAACAATCTATCCGCATTAGACATTAGTTTTAGCGACTCTCGA
ATTGAACCTCTGTTGTTTAGATACCGAGCCCGCCATTTTGCTTGGACCCTTGATGAGACTGAGCAGCAGAAGTGGGCAAA
TCATTGTCGTGAATTTTTCGAAAGTCGTATTGAAGACTACATGCTAAATATGGAAAACTTAGTTCACGAACATGAGTCTG
ACGAGAAGAAGCTCGCCATACTAAAATCCGTCTACCGCTACGTGGAGCGTCTCGTTTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

• Exonuclease (RNase_T) (10-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.085	99.366	0.776