Detailed information NTG0548319

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J4N45_RS02460
• Genome accession: NZ_CP071850
• Coordinates: 471396..472379 (+)
• Length: 327 a.a.
• NCBI ID: WP_042475947.1
• Uniprot ID: A0A090SPT2
• Organism: Vibrio sp. SCSIO 43140
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 466396..477379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N45_RS02425 (J4N45_02420)	ftsB	466457..466738 (+)	282	WP_128647962.1	cell division protein FtsB	-
J4N45_RS02430 (J4N45_02425)	ispD	466735..467445 (+)	711	WP_128647963.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J4N45_RS02435 (J4N45_02430)	ispF	467442..467921 (+)	480	WP_128647964.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J4N45_RS02440 (J4N45_02435)	truD	467934..468911 (+)	978	WP_252013395.1	tRNA pseudouridine(13) synthase TruD	-
J4N45_RS02445 (J4N45_02440)	surE	468917..469678 (+)	762	WP_252013398.1	5'/3'-nucleotidase SurE	-
J4N45_RS02450 (J4N45_02445)	-	469682..470305 (+)	624	WP_128647967.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J4N45_RS02455 (J4N45_02450)	nlpD	470306..471277 (+)	972	WP_252013400.1	murein hydrolase activator NlpD	-
J4N45_RS02460 (J4N45_02455)	rpoS	471396..472379 (+)	984	WP_042475947.1	RNA polymerase sigma factor RpoS	Regulator
J4N45_RS02465 (J4N45_02460)	-	472449..473060 (-)	612	WP_042475948.1	TIGR04211 family SH3 domain-containing protein	-
J4N45_RS02470 (J4N45_02465)	-	473281..474543 (-)	1263	WP_252013401.1	inorganic phosphate transporter	-
J4N45_RS02475 (J4N45_02470)	-	474668..475348 (-)	681	WP_042475951.1	TIGR00153 family protein	-
J4N45_RS02480 (J4N45_02475)	-	475555..477072 (+)	1518	WP_252013403.1	inorganic triphosphatase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37356.11 Da
• Isoelectric Point: 4.6701

>NTDB_id=548319 J4N45_RS02460 WP_042475947.1 471396..472379(+) (rpoS) [Vibrio sp. SCSIO 43140]
MSISNAVTKNENFDIENESVDVVQSTLTNDDSNSEAEEKDLYDASAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALKG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQKLDKPVSDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDSTHSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLRDILVKQGLNMES
LFNFDDD

Nucleotide

• Length: 984 bp

>NTDB_id=548319 J4N45_RS02460 WP_042475947.1 471396..472379(+) (rpoS) [Vibrio sp. SCSIO 43140]
ATGAGTATCAGCAATGCAGTAACCAAGAACGAAAACTTCGACATTGAAAACGAATCCGTTGATGTTGTGCAGTCAACATT
GACCAATGATGATTCCAACTCAGAAGCCGAAGAGAAAGACCTGTACGATGCCTCGGCCAAAAGCTTGGATGCGACCCAGC
TCTATCTAGGGGAAATTGGCTTCTCACCACTACTTACCGCTGAAGAAGAAGTTCTTTATGCAAGACGTGCACTCAAAGGA
GATGAAGCTGCACGTAAACGTATGATCGAAAGTAACCTTCGTCTCGTTGTGAAAATCTCTCGACGCTACAGCAACCGTGG
CCTTGCACTCCTTGATTTAATCGAAGAGGGCAACCTAGGTTTGATCCGTGCTGTAGAGAAGTTTGACCCTGAACGTGGTT
TCCGATTCTCAACCTATGCGACCTGGTGGATCCGCCAAACTATTGAACGTGCTTTGATGAATCAGACGCGCACCATTCGT
TTGCCAATTCACGTCGTCAAAGAGCTGAATATTTACCTTCGTACGGCTCGTGAGCTGTCGCAAAAGCTTGACCATGAGCC
GACGGCTGAAGAGATTGCGCAGAAACTGGATAAGCCGGTCAGCGATGTATCTAAAATGCTTCGCCTTAATGAACGCATCA
GCTCAGTCGATACGCCAATTGGTGGAGATGGTGAAAAGGCGCTACTGGATATCATTCCTGATTCAACCCATTCTGATCCA
GAAGTATCAACACAAGACGATGACATCAAGTCATCACTTATTCATTGGTTAGATGAGCTGAACCCGAAACAAAAAGAGGT
GCTGGCTCGAAGGTTTGGTCTTCTTGGTTACGAGCCATCGACACTTGAAGAGGTCGGCAGAGAGATTAACCTCACTCGTG
AACGTGTTCGTCAGATCCAAGTTGAAGGGCTTCGCAGGTTGCGCGACATCCTAGTGAAACAGGGGTTGAATATGGAGTCG
CTGTTCAACTTCGATGACGATTAG

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70, region 4 (Sigma70_r4) (256-308)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A090SPT2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.635	100	0.844