Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   J4N39_RS18660 Genome accession   NZ_CP071849
Coordinates   848862..850040 (-) Length   392 a.a.
NCBI ID   WP_252026732.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 843862..855040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS18640 (J4N39_18650) - 843931..845166 (+) 1236 WP_252026726.1 type II toxin-antitoxin system HipA family toxin -
  J4N39_RS18645 (J4N39_18655) - 845593..846036 (-) 444 WP_252026728.1 MarR family transcriptional regulator -
  J4N39_RS18650 (J4N39_18660) - 846146..846568 (+) 423 WP_252026730.1 organic hydroperoxide resistance protein -
  J4N39_RS18655 (J4N39_18665) - 846757..848814 (+) 2058 WP_252026953.1 response regulator -
  J4N39_RS18660 (J4N39_18670) cqsA 848862..850040 (-) 1179 WP_252026732.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J4N39_RS18665 (J4N39_18675) - 850232..851182 (-) 951 WP_252026734.1 TDT family transporter -
  J4N39_RS18670 (J4N39_18680) - 851771..852565 (-) 795 WP_252026737.1 EAL domain-containing protein -
  J4N39_RS18675 (J4N39_18685) ylqF 852714..853658 (-) 945 WP_252026739.1 ribosome biogenesis GTPase YlqF -
  J4N39_RS18680 (J4N39_18690) thiD 854206..855039 (+) 834 WP_252026741.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 43420.37 Da        Isoelectric Point: 6.6816

>NTDB_id=548311 J4N39_RS18660 WP_252026732.1 848862..850040(-) (cqsA) [Vibrio sp. SCSIO 43136]
MNTNTALPKPLPSFISDRLDTYLHQHIECRSNAQHLVHGLEPNKADIVLRSNDYLAVSNHPSIKQAQLESIENAEHEIVM
SAVFEQKYTAEEESFEYQLSQYTGFENCIVTQSGWAANVGLLHTIANESTPIYIDFYAHMSLWHGAENAKAPVHSFMHNK
IHHLKKLLELHGPGIIIVDSVYSTIGTVSPLREVVALGNLHGCAIIVDESHSLGTHGPHGSGLVAELGLTSKVDFVTVSL
AKAFAYRAGAILCHEKMQRWLPFTSLPAIFSSALLPHELETLKATLSLIKSSDERRNKLFKQATHLKQGLEALGYRVQSQ
SQIIAIETGTEEKTEQVRDYFEKHGLFGSVFCHPATPKNRAIIRLSLNSGVSDRDIDNILTICSQAKSEGVM

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=548311 J4N39_RS18660 WP_252026732.1 848862..850040(-) (cqsA) [Vibrio sp. SCSIO 43136]
ATGAATACTAATACTGCACTACCTAAACCATTGCCAAGTTTTATTAGTGATCGCTTAGACACTTATTTACATCAACACAT
TGAATGCCGCAGTAATGCGCAGCATCTAGTGCACGGGTTGGAGCCTAATAAAGCAGATATAGTTCTAAGAAGTAACGATT
ACCTTGCTGTTTCAAATCATCCGAGCATTAAACAAGCTCAACTAGAATCGATCGAAAATGCTGAACATGAAATTGTCATG
TCAGCAGTATTTGAGCAGAAATACACCGCAGAAGAAGAGAGCTTTGAGTATCAACTGAGCCAATACACAGGCTTTGAAAA
CTGCATTGTTACTCAATCTGGTTGGGCTGCAAACGTTGGACTACTGCACACCATTGCCAACGAATCAACACCCATATATA
TCGACTTCTACGCACATATGTCGCTATGGCATGGTGCTGAGAATGCTAAAGCACCAGTGCACTCCTTTATGCACAACAAA
ATCCACCATCTCAAGAAGCTACTTGAACTTCATGGGCCTGGTATTATTATTGTCGACTCGGTTTACAGCACAATCGGTAC
AGTATCACCGCTACGCGAGGTGGTCGCATTAGGTAACTTGCACGGCTGCGCAATTATAGTCGACGAATCCCACTCTCTTG
GAACCCATGGCCCGCACGGCTCAGGCCTAGTTGCTGAGCTGGGATTAACAAGCAAAGTAGATTTTGTCACTGTGAGTCTC
GCCAAAGCTTTTGCCTATCGAGCAGGTGCAATTTTGTGCCATGAAAAGATGCAACGATGGTTACCATTTACATCACTACC
CGCTATTTTCAGCTCAGCACTTCTACCACATGAACTGGAAACGCTCAAAGCTACATTAAGTTTAATTAAATCCAGCGACG
AGAGAAGAAACAAGCTATTTAAACAAGCAACGCATTTAAAACAAGGTCTGGAAGCACTCGGATACCGAGTCCAAAGTCAG
TCCCAAATAATAGCTATTGAAACAGGGACCGAGGAAAAAACTGAACAAGTTCGCGACTATTTCGAGAAACATGGATTATT
TGGGTCAGTATTTTGTCATCCAGCTACACCTAAGAATAGAGCTATTATACGGTTATCTCTTAATTCAGGTGTGTCCGATC
GGGATATAGACAATATTTTAACGATTTGTAGCCAAGCGAAATCAGAAGGGGTTATGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

53.247

98.214

0.523