Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   J4N39_RS17710 Genome accession   NZ_CP071849
Coordinates   660697..661797 (+) Length   366 a.a.
NCBI ID   WP_252026382.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 655697..666797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS17690 (J4N39_17705) - 657106..657357 (-) 252 WP_252026378.1 chaperone NapD -
  J4N39_RS17695 (J4N39_17710) napF 657341..657850 (-) 510 WP_252026940.1 ferredoxin-type protein NapF -
  J4N39_RS17700 (J4N39_17715) narQ 658264..659913 (+) 1650 WP_252026380.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  J4N39_RS17705 (J4N39_17720) - 659900..660535 (+) 636 WP_252026942.1 response regulator -
  J4N39_RS17710 (J4N39_17725) luxP 660697..661797 (+) 1101 WP_252026382.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  J4N39_RS17715 (J4N39_17730) - 661801..664404 (+) 2604 WP_252026384.1 LuxQ periplasmic sensor domain-containing protein -
  J4N39_RS17720 (J4N39_17735) - 664668..665279 (+) 612 WP_252026386.1 hypothetical protein -
  J4N39_RS17725 (J4N39_17740) - 665301..666560 (-) 1260 WP_252026388.1 hydroxymethylglutaryl-CoA reductase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41205.36 Da        Isoelectric Point: 4.9299

>NTDB_id=548310 J4N39_RS17710 WP_252026382.1 660697..661797(+) (luxP) [Vibrio sp. SCSIO 43136]
MKWHSLLLGVLTPFIASQAIAGRSLDSFWEYSDYLSAHPEQQALTNALGETVRQTAIPLKVDQDGPVTISVVYPGEQISD
YWRRNIKAFSMRMDELGIEYEINQVFTRPGAGSRQQSLSLMKALQNKSGYLIFTLDTTRHRKFIEHVLNNPDTKLILQNI
TTPVKAWEEKQPFLYVGFDHPTGSRALAQHFNNRFPDGADYSLLYFSPGYVSDARGDTFIEEMKQGSKPYNLMSSFYTKA
DRQSGYEATMTALQSNPDIEFIYACSTDVALGASQALKFANRRDVLINGWGGGSAELEAIEEGGLDVTVMRMNDDTGVAM
AEAIKWDLEGKPVPTVYSGDFEIITRDESHEKIEQLKLRAFRYSDQ

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=548310 J4N39_RS17710 WP_252026382.1 660697..661797(+) (luxP) [Vibrio sp. SCSIO 43136]
ATGAAGTGGCATAGTTTACTGCTAGGGGTGTTAACACCATTTATTGCGTCTCAAGCAATCGCCGGTCGCTCTCTCGACAG
CTTTTGGGAATATAGTGATTACCTTTCGGCTCATCCAGAGCAGCAAGCGCTCACCAATGCGCTTGGCGAAACGGTCCGTC
AAACTGCGATACCTTTAAAGGTGGATCAAGACGGGCCAGTGACAATCTCTGTTGTTTACCCGGGCGAACAGATTTCCGAT
TACTGGCGACGCAATATTAAAGCGTTTAGCATGCGCATGGATGAGCTCGGGATTGAATACGAAATCAATCAGGTTTTTAC
TCGTCCGGGCGCAGGCTCACGTCAGCAAAGTTTGTCTTTGATGAAGGCGCTACAAAACAAGTCGGGTTATTTGATTTTTA
CCCTTGATACTACTCGTCATCGAAAGTTCATTGAACACGTCTTAAATAATCCTGATACCAAGCTCATCTTGCAAAACATC
ACCACGCCAGTGAAAGCTTGGGAAGAAAAACAGCCATTCCTTTACGTGGGGTTTGATCATCCCACTGGCAGTCGAGCGCT
AGCTCAGCACTTCAACAACAGATTCCCAGATGGTGCGGATTACTCATTATTGTATTTCTCTCCTGGTTATGTGAGTGATG
CTCGAGGTGACACTTTCATTGAAGAAATGAAACAAGGGTCTAAACCGTACAACTTGATGTCCTCTTTTTATACTAAAGCG
GATCGTCAAAGTGGTTATGAGGCCACCATGACGGCACTTCAATCCAATCCTGATATTGAATTCATTTACGCCTGTTCGAC
AGATGTTGCTCTAGGGGCGTCTCAGGCACTGAAATTTGCTAACCGACGTGATGTTCTCATTAACGGTTGGGGAGGCGGCA
GTGCAGAACTCGAAGCCATCGAAGAAGGTGGGTTAGACGTTACTGTGATGCGAATGAACGACGACACTGGCGTCGCAATG
GCGGAAGCAATTAAGTGGGATCTGGAGGGAAAACCTGTACCTACGGTCTACTCAGGCGATTTTGAGATAATTACTCGCGA
TGAGTCGCACGAAAAAATTGAACAACTGAAGCTCAGAGCTTTTCGTTACTCGGATCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(169-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

65.015

93.716

0.609