Detailed information NTG0548297

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: J4N39_RS12000
• Genome accession: NZ_CP071848
• Coordinates: 2533457..2536837 (+)
• Length: 1126 a.a.
• NCBI ID: WP_252019675.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43136
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2528457..2541837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N39_RS11980 (J4N39_11990)	erpA	2529080..2529421 (-)	342	WP_252019651.1	iron-sulfur cluster insertion protein ErpA	-
J4N39_RS11985 (J4N39_11995)	hemL	2529647..2530939 (+)	1293	WP_252019654.1	glutamate-1-semialdehyde 2,1-aminomutase	-
J4N39_RS11990 (J4N39_12000)	-	2531117..2532202 (+)	1086	WP_252019657.1	AI-2E family transporter	-
J4N39_RS11995 (J4N39_12005)	rsmC	2532266..2533288 (+)	1023	WP_252019672.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
J4N39_RS12000 (J4N39_12010)	chiS	2533457..2536837 (+)	3381	WP_252019675.1	response regulator	Regulator
J4N39_RS12005 (J4N39_12015)	-	2537528..2539201 (+)	1674	WP_252019678.1	ABC transporter substrate-binding protein	-
J4N39_RS12010 (J4N39_12020)	-	2539361..2540347 (+)	987	WP_252019682.1	ABC transporter permease	-
J4N39_RS12015 (J4N39_12025)	-	2540350..2541375 (+)	1026	WP_252019685.1	ABC transporter permease	-

Sequence

Protein

• Length: 1126 a.a.
• Molecular weight: 127140.41 Da
• Isoelectric Point: 5.2415

>NTDB_id=548297 J4N39_RS12000 WP_252019675.1 2533457..2536837(+) (chiS) [Vibrio sp. SCSIO 43136]
MFKFHRKQRFKRLQHTLMIAFLALSIIPLTVIALFFLQSHSQDLQEQSTSHLISVRDSKKQQLIDYYFSKETELIGFVRS
ELAYASGGRFYGLVNAFKNLGQDIEKARDNAQQRYIVGSGDQVRTSIMPESSDYVGSERYRLLHKRYHRAYIERLKRSDF
DDILLVDVDGNVAYSVTKGTQFGTNLLTGPYQDSVLGQTFANIQNQVKQLDLDHDVLPTIVSDFALEDDQSVAWFAAPIV
QQGYLHSYAMMRLPATRLLNLFNDTLNTDMVTLLVGQDLTPRLLTNSQQQVDDSLAIVKAALGNSERVESYVNGSDEQVL
AAYTSIELPNIQWALITELPERIAYARIHQLEKLFVAAMLIAIILVFICSHYLSNFITSPLLKLTWSAERVSAGDLDEDL
FTTTRKDEIGRLAVAFARMQRSIRDKIELIKQQNRELEANLTIISKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIA
EALVAGANGPIPATQRHQLDIIINSGQRLATLVDDLLDYHKMRYGKLEINSAAVNLSSATRLVLELSQHLLGNKSLRIIN
QVPTDMPLVSADPQRLEQVMYNLIGNAIKYTSEGKVVISATVIDDAIRIQVVDTGQGIPAQELELIFEPLIQAGQDTNRY
RQGAGLGLSISRQLVELMGGSLYVSSQPMVGTTFSFSLPLANPDQIEATEQNEAHHHFQAPESSELPTTPQELPENPDGP
LVIVADDEPVNLQILESFLCIEGYRVKTASDGPEVLELIDEEKPELLLLDVMMPGMSGYQVCEQLRQRFDHAELPIIMLT
ALSQTHDRVRGFDAGANDYLTKPFNKPELGSRIKAHLQASKSELRRQENSLLQNELKQRALVEANLLETQGRLLEQLESA
PEAIICLDHEHRIHYSNQAATRLFKRSREQLKRSSADELIAAKFLSIEQEHYCGQIELFVGDSRIRHSSDIFQLPPGNEI
KSLFIFDTGSGANSERIDNLETAIEALSSYAFEGDKDKLQQLKELGGEFTRLADKVSDKSPNKQELMREILVEAMTTALD
YWESDTGESKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRTETLPKTPRWRTVLNSMDYILEHCHGQNTQRDKLTSLRDKL
QHLLTQ

Nucleotide

• Length: 3381 bp

>NTDB_id=548297 J4N39_RS12000 WP_252019675.1 2533457..2536837(+) (chiS) [Vibrio sp. SCSIO 43136]
ATGTTTAAATTCCATCGCAAGCAACGATTTAAAAGACTGCAACATACTCTAATGATTGCCTTTTTGGCCTTGAGTATCAT
TCCACTTACCGTTATTGCTCTGTTCTTTCTTCAGTCTCATAGCCAAGATCTTCAAGAGCAAAGCACGTCACATTTGATCT
CGGTAAGAGACTCGAAAAAGCAGCAGTTAATCGACTATTACTTTTCGAAAGAGACCGAGCTGATTGGTTTTGTCCGCTCA
GAGCTTGCATACGCCAGCGGTGGCCGTTTTTATGGCTTAGTCAATGCGTTCAAAAACCTTGGTCAAGACATTGAAAAAGC
AAGAGATAACGCACAGCAGCGTTACATCGTAGGATCTGGAGATCAAGTAAGAACCTCGATCATGCCAGAGTCGAGTGATT
ATGTCGGCAGCGAGCGTTACCGCCTACTGCATAAACGCTACCATAGAGCCTATATTGAACGCTTAAAGCGCTCAGATTTC
GATGACATTTTGCTGGTAGATGTGGACGGCAACGTCGCCTATTCAGTCACTAAAGGCACACAGTTTGGCACCAATCTTCT
GACTGGCCCTTATCAAGACTCGGTACTCGGTCAAACCTTTGCTAACATCCAAAACCAAGTTAAGCAACTAGACCTAGACC
ACGATGTACTGCCAACCATAGTGTCTGATTTTGCCTTAGAAGATGACCAAAGTGTTGCTTGGTTTGCGGCGCCTATTGTT
CAGCAAGGCTACCTACATAGCTATGCAATGATGAGGCTGCCTGCCACACGTTTATTAAACCTATTTAACGACACCCTTAA
CACCGACATGGTGACCTTGTTGGTAGGACAAGACCTTACCCCTCGCCTTCTGACTAACTCACAGCAACAAGTGGACGATA
GCCTTGCAATCGTCAAAGCTGCGCTAGGTAATTCAGAGCGCGTAGAGTCTTACGTCAATGGCAGCGACGAACAGGTTCTC
GCAGCATACACTAGCATTGAACTGCCAAACATTCAGTGGGCATTGATCACCGAACTGCCAGAGCGAATCGCTTATGCGCG
TATCCACCAGCTTGAAAAACTGTTTGTCGCTGCGATGCTCATCGCCATTATTCTGGTATTTATCTGCTCACACTATCTGT
CGAATTTCATTACCTCGCCACTGTTGAAACTGACTTGGTCGGCTGAGCGAGTCTCGGCAGGTGATCTCGACGAAGACTTG
TTCACGACCACACGTAAAGATGAAATTGGGCGGCTCGCCGTCGCTTTTGCCCGAATGCAGCGCTCCATTCGCGACAAGAT
CGAGTTGATCAAACAACAGAATCGAGAATTAGAAGCCAACTTAACCATCATTTCGAAGCAAAACGATGAGTTGCAGCTGG
CAAATAAGCTCAAAGATGAATTTCTAGCCACCACCTCCCATGAGCTGAGAACCCCGCTACATGGTATGATTGGGATCGCT
GAAGCCCTTGTCGCTGGGGCAAATGGTCCGATCCCGGCAACTCAGCGCCATCAACTCGACATTATCATCAACAGTGGTCA
ACGCTTAGCAACCTTGGTGGATGACCTGCTCGATTACCACAAAATGCGTTATGGCAAGCTTGAAATTAATTCAGCAGCAG
TCAACCTATCTAGCGCAACACGGCTAGTGCTTGAGCTATCACAGCACCTGCTTGGTAACAAGTCACTGCGTATCATCAAT
CAAGTACCCACCGATATGCCACTTGTAAGTGCTGACCCACAGCGCCTTGAGCAAGTGATGTATAACCTGATTGGTAACGC
CATCAAATACACTTCCGAAGGTAAGGTGGTCATCTCAGCTACCGTCATCGACGATGCGATTCGCATTCAAGTCGTGGATA
CTGGACAAGGGATCCCAGCGCAAGAATTGGAGCTTATTTTTGAGCCACTTATCCAAGCAGGCCAAGATACTAACCGATAC
CGACAAGGGGCTGGATTGGGATTATCCATCAGTCGTCAGTTGGTCGAATTGATGGGCGGTTCACTTTATGTAAGCAGCCA
GCCTATGGTAGGTACGACATTCAGCTTCAGCTTGCCATTGGCTAACCCTGACCAGATTGAAGCAACCGAGCAGAATGAAG
CACACCACCACTTCCAAGCACCTGAAAGTAGTGAGTTGCCTACAACCCCTCAAGAGTTGCCAGAAAACCCAGATGGTCCC
TTGGTCATTGTGGCGGATGATGAACCAGTCAACCTACAAATATTGGAAAGCTTCCTTTGCATTGAAGGCTACCGTGTCAA
AACCGCCAGCGACGGCCCAGAAGTATTAGAGCTGATTGACGAAGAGAAACCCGAACTACTGTTACTCGATGTCATGATGC
CAGGCATGAGTGGCTATCAGGTGTGTGAACAGCTAAGGCAACGTTTTGATCACGCTGAACTTCCGATCATCATGCTGACT
GCATTAAGTCAAACCCACGACCGAGTCCGAGGGTTCGATGCTGGGGCCAACGACTACCTGACCAAACCATTTAACAAGCC
AGAATTAGGCTCTCGCATCAAAGCGCACCTTCAAGCCAGCAAGTCTGAATTGCGACGCCAAGAGAACTCATTGCTGCAAA
ATGAGCTTAAGCAACGCGCCTTAGTTGAAGCTAATCTGCTTGAAACACAAGGCAGACTCCTTGAGCAGCTAGAGTCTGCC
CCAGAAGCCATTATCTGTTTAGACCATGAACACAGGATTCACTACTCTAATCAGGCCGCCACCCGGCTATTCAAGCGCTC
TCGCGAGCAATTAAAACGCAGCTCAGCTGACGAATTGATTGCTGCGAAATTCCTCTCGATTGAACAGGAACACTACTGTG
GACAAATAGAACTGTTTGTCGGAGACAGCCGAATACGTCATAGCAGCGATATTTTTCAGTTGCCACCAGGCAATGAGATC
AAATCACTGTTTATCTTTGATACCGGCTCTGGAGCGAACAGTGAGCGGATTGATAACCTAGAAACCGCAATTGAAGCCCT
ATCAAGCTATGCTTTTGAAGGCGACAAGGACAAGCTGCAACAACTCAAAGAGCTAGGGGGTGAATTTACTCGACTTGCCG
ATAAAGTCAGCGATAAGAGCCCCAACAAGCAAGAGTTAATGCGTGAAATTTTGGTTGAAGCCATGACGACTGCGCTCGAT
TACTGGGAAAGCGATACTGGTGAGAGCAAATTTACTTTTGCAGAGCAAAGCGGATTATGGCGAGTCTATCTAGATCGAAG
CACGCTGCAAACACGCACACTAGACAAATATCTGCGCACAGAAACCCTGCCAAAGACCCCTCGCTGGCGTACAGTGCTTA
ACTCAATGGATTACATTCTAGAGCATTGCCATGGACAAAATACGCAGCGAGATAAGCTCACATCGCTACGGGATAAGCTT
CAGCACTTATTAACACAATGA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (373-425)

• Response regulator receiver domain (Response_reg) (722-833)

• His Kinase A (phospho-acceptor) domain (HisKA) (458-523)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (572-681)

• PAS fold (PAS) (874-920)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	70.328	100	0.705