Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J4N39_RS07560 Genome accession   NZ_CP071848
Coordinates   1644998..1646422 (+) Length   474 a.a.
NCBI ID   WP_252017671.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1639998..1651422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS07540 (J4N39_07570) - 1640198..1640809 (-) 612 WP_252017663.1 flavin reductase family protein -
  J4N39_RS07545 (J4N39_07575) - 1641394..1642086 (+) 693 WP_252017665.1 NAD(P)H-binding protein -
  J4N39_RS07550 (J4N39_07580) - 1642247..1643623 (+) 1377 WP_252017667.1 L-cystine transporter -
  J4N39_RS07555 (J4N39_07585) - 1643728..1644861 (+) 1134 WP_252017669.1 GGDEF domain-containing protein -
  J4N39_RS07560 (J4N39_07590) sbcB 1644998..1646422 (+) 1425 WP_252017671.1 exodeoxyribonuclease I Machinery gene
  J4N39_RS07565 (J4N39_07595) - 1646427..1646798 (+) 372 WP_252017673.1 CidA/LrgA family protein -
  J4N39_RS07570 (J4N39_07600) - 1646798..1647487 (+) 690 WP_252023659.1 LrgB family protein -
  J4N39_RS07575 (J4N39_07605) - 1647659..1648570 (+) 912 WP_286036835.1 siderophore ABC transporter substrate-binding protein -
  J4N39_RS07580 (J4N39_07610) - 1648571..1649506 (+) 936 WP_252017677.1 iron chelate uptake ABC transporter family permease subunit -
  J4N39_RS07585 (J4N39_07615) - 1649499..1650449 (+) 951 WP_252017679.1 iron chelate uptake ABC transporter family permease subunit -
  J4N39_RS07590 (J4N39_07620) - 1650457..1651218 (+) 762 WP_252017682.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54827.06 Da        Isoelectric Point: 4.9635

>NTDB_id=548290 J4N39_RS07560 WP_252017671.1 1644998..1646422(+) (sbcB) [Vibrio sp. SCSIO 43136]
MSHDHQPSYFFFDYETWGTNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPAPEAALITGISPQLAQSKGLPEP
EFIAKIHQALSVPNTTSLGYNSIRFDDEVTRYTLYRNFFDPYAWSWQNGNTRWDLLDVMRAVHALRPDGIEWPEREDGFP
SFKLEHLSVENGIEHENAHDAMADVIATIELAKKVKQAQPKMFDYLYKMRTKRKLNELVDIVNMTPLVHVSGMLGAECGY
TSWMVPVAWHPTNQNAVVMIDLAKDPQPLLDLTADELRQRLYTRRDELAEGELPVPIKLVHLNKCPILAPAKTLTAENAA
NLGIDREQCLKNLALLRQHPEIREKLTALYSQEREYDNDTDVDTQLYSGFFSHADKAAIDIVRESTPEQLSVLDLNVADE
RIKPLLFRYRARNFEWSLSEDEQQRWNLYRRDYFETRLPDYLLNLENLVHEHEGDERKLALLKSIYRYVEKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=548290 J4N39_RS07560 WP_252017671.1 1644998..1646422(+) (sbcB) [Vibrio sp. SCSIO 43136]
ATGTCTCACGACCATCAGCCTTCATACTTCTTCTTCGATTACGAAACTTGGGGAACCAATCCCGCTAAAGACCGACCAAG
TCAGTTTGCTGGCGTTCGCACTGATATGGATTTCAATATCATTGGTGAGCCGTTAGTCATTTATTGTCAGCCGCCAAGCG
ATTACCTTCCAGCACCTGAAGCTGCTTTAATTACGGGCATTTCACCGCAATTGGCGCAAAGCAAGGGGCTTCCAGAGCCT
GAATTTATCGCAAAGATCCACCAAGCACTTTCGGTACCTAATACCACCAGCCTTGGCTACAACAGCATTCGTTTTGATGA
TGAAGTCACTCGCTATACGCTCTACCGTAACTTCTTTGACCCTTATGCATGGAGTTGGCAAAACGGAAATACCCGCTGGG
ATTTGTTAGATGTGATGCGTGCAGTGCATGCCTTGCGTCCGGATGGTATCGAGTGGCCTGAGCGTGAAGATGGGTTTCCT
AGCTTTAAGCTTGAGCATCTATCGGTCGAAAATGGGATTGAGCACGAAAATGCCCATGACGCAATGGCCGACGTAATTGC
TACCATTGAACTAGCGAAAAAGGTTAAACAAGCACAACCTAAAATGTTCGACTATCTATATAAGATGCGTACCAAGCGTA
AGCTTAATGAGCTAGTCGACATTGTAAATATGACGCCGCTAGTCCACGTATCGGGTATGTTAGGTGCAGAATGTGGCTAC
ACAAGTTGGATGGTGCCTGTTGCTTGGCACCCTACTAACCAAAATGCGGTGGTAATGATTGATCTTGCAAAAGATCCGCA
GCCACTGCTTGATCTGACAGCAGATGAATTACGCCAGCGACTATATACCCGCCGAGATGAACTTGCAGAGGGTGAGCTAC
CCGTACCAATAAAACTCGTGCATCTGAATAAATGTCCAATTCTCGCCCCAGCGAAAACCCTCACGGCTGAGAATGCAGCC
AATCTAGGGATTGATCGAGAGCAATGTTTGAAAAACCTTGCACTATTGCGTCAGCATCCTGAAATTAGAGAAAAGCTCAC
GGCTTTATACAGCCAAGAGCGAGAATATGACAATGACACAGATGTGGATACACAGCTTTATAGTGGCTTCTTCTCTCACG
CAGATAAGGCTGCGATTGATATCGTGCGTGAGTCCACTCCTGAGCAGCTTTCGGTGCTCGATCTTAATGTCGCAGATGAG
CGGATCAAACCTCTGTTGTTTAGGTATCGCGCCCGTAACTTCGAGTGGAGTTTGAGCGAAGACGAGCAGCAGCGCTGGAA
CCTTTACCGACGAGATTATTTCGAAACTCGCCTTCCAGATTACTTGCTAAATCTAGAGAACCTAGTGCATGAGCACGAAG
GGGACGAACGTAAGTTGGCGCTACTAAAGTCTATCTATCGTTACGTAGAAAAATTGGTATCGTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

73.629

100

0.736