Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LSP17_RS28175 Genome accession   NZ_CP089062
Coordinates   6114393..6115835 (-) Length   480 a.a.
NCBI ID   WP_010793818.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF38     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6109393..6120835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP17_RS28145 (LSP17_28150) - 6109719..6110834 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  LSP17_RS28150 (LSP17_28155) - 6110827..6111588 (+) 762 WP_003101179.1 DUF2334 domain-containing protein -
  LSP17_RS28155 (LSP17_28160) - 6111585..6112586 (+) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  LSP17_RS28160 (LSP17_28165) - 6112561..6112773 (-) 213 WP_003101176.1 hypothetical protein -
  LSP17_RS28165 (LSP17_28170) purU 6112823..6113674 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  LSP17_RS28170 (LSP17_28175) mvaT 6113934..6114308 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  LSP17_RS28175 (LSP17_28180) sbcB 6114393..6115835 (-) 1443 WP_010793818.1 exodeoxyribonuclease I Machinery gene
  LSP17_RS28180 (LSP17_28185) - 6116060..6116797 (+) 738 WP_003101171.1 hypothetical protein -
  LSP17_RS28185 (LSP17_28190) - 6116835..6117632 (+) 798 WP_003123273.1 RDD family protein -
  LSP17_RS28190 (LSP17_28195) - 6117629..6118609 (+) 981 WP_003093893.1 stage II sporulation protein M -
  LSP17_RS28195 (LSP17_28200) - 6118596..6120167 (+) 1572 WP_003161496.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55421.65 Da        Isoelectric Point: 5.4134

>NTDB_id=548290 LSP17_RS28175 WP_010793818.1 6114393..6115835(-) (sbcB) [Pseudomonas aeruginosa strain UNC_PaerCF38]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVAL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=548290 LSP17_RS28175 WP_010793818.1 6114393..6115835(-) (sbcB) [Pseudomonas aeruginosa strain UNC_PaerCF38]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTACGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGCCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGATGAGTGCCAGCAAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.412

88.542

0.438