Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   SYN7502_RS02970 Genome accession   NC_019702
Coordinates   600832..601962 (-) Length   376 a.a.
NCBI ID   WP_015167408.1    Uniprot ID   K9SSJ1
Organism   Synechococcus sp. PCC 7502     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 595832..606962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYN7502_RS21140 (Syn7502_00595) secG 596828..597052 (+) 225 Protein_591 preprotein translocase subunit SecG -
  SYN7502_RS02955 (Syn7502_00596) - 597245..599332 (-) 2088 WP_015167405.1 type II secretory pathway, component HofQ -
  SYN7502_RS02960 (Syn7502_00597) - 599414..600151 (-) 738 WP_015167406.1 type 4a pilus biogenesis protein PilO -
  SYN7502_RS02965 (Syn7502_00598) - 600148..600828 (-) 681 WP_015167407.1 PilN domain-containing protein -
  SYN7502_RS02970 (Syn7502_00599) pilM 600832..601962 (-) 1131 WP_015167408.1 type IV pilus biogenesis protein PilM Machinery gene
  SYN7502_RS02975 (Syn7502_00600) - 602212..603021 (-) 810 WP_015167409.1 A24 family peptidase -
  SYN7502_RS18060 (Syn7502_00601) - 603152..604999 (+) 1848 WP_015167410.1 serine/threonine-protein kinase -
  SYN7502_RS02985 (Syn7502_00602) rseP 605167..606246 (+) 1080 WP_015167411.1 RIP metalloprotease RseP -
  SYN7502_RS02990 (Syn7502_00603) - 606254..606832 (+) 579 WP_015167412.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40764.62 Da        Isoelectric Point: 4.4714

>NTDB_id=54829 SYN7502_RS02970 WP_015167408.1 600832..601962(-) (pilM) [Synechococcus sp. PCC 7502]
MLSQLSFGSLSKLFNVKAQGIGIEINSERVNIVQVRRKGKSGFKLVSHASTILPEGVVEEGRINDPVVLGEIIRSLIAEK
KIKEKKVVTAIPGRETVSRLIRLPAEISDSELREMVLNQEASLYLPFPREDADVDYQKLGTTLDDDGVERLEILMVATPK
EVTDMYLQAMQTAELNTEVVEVTSFALIRALKDRLSGFASAAEAVAIVDIEYESTEITIAVDGVPQFSRTVAIGTAQIQN
AQLRAINLPPRRNTDMDMLAAMSVPFQNSDTVGLSGQGSSPGDAAIFRVLGDLADELRRSIDFHTSQNAGSDVIQLLIVG
PGACIGELSEFFSQRLGIAASQVDPLEALSISSDVEIPKQERMGMSVVLGLSVREP

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=54829 SYN7502_RS02970 WP_015167408.1 600832..601962(-) (pilM) [Synechococcus sp. PCC 7502]
ATGTTATCTCAGTTAAGTTTTGGTAGTCTAAGCAAGCTCTTCAATGTAAAAGCTCAGGGGATTGGCATTGAAATCAACTC
AGAAAGAGTTAACATTGTTCAAGTCCGCCGCAAGGGGAAATCTGGCTTTAAACTAGTAAGTCATGCTAGTACTATTCTGC
CCGAAGGAGTGGTCGAGGAAGGACGTATAAATGATCCAGTTGTATTAGGAGAGATTATTCGCTCTCTAATCGCCGAAAAG
AAAATTAAAGAAAAAAAAGTTGTCACTGCCATCCCCGGGCGAGAAACAGTAAGTAGGTTGATTCGATTGCCTGCTGAGAT
ATCCGATAGCGAACTACGGGAAATGGTTCTTAACCAAGAAGCCAGCCTATATTTACCTTTTCCTAGAGAGGATGCTGATG
TTGACTATCAAAAACTTGGCACTACCTTAGATGATGATGGGGTAGAACGACTAGAGATTTTAATGGTTGCCACACCCAAA
GAAGTGACAGATATGTATTTACAGGCTATGCAGACGGCTGAACTTAATACAGAGGTGGTAGAAGTTACGAGCTTTGCTTT
GATTAGAGCCTTAAAAGATCGTTTGTCGGGGTTTGCTTCAGCAGCAGAGGCAGTGGCGATCGTTGACATTGAGTATGAAT
CCACAGAAATTACCATAGCTGTAGATGGAGTACCCCAGTTTTCTCGGACTGTAGCCATAGGTACTGCTCAAATTCAAAAT
GCTCAGCTACGGGCAATTAACCTTCCTCCTAGGCGTAACACCGATATGGATATGCTCGCAGCAATGAGTGTACCATTTCA
AAATAGCGATACCGTAGGACTTTCTGGTCAAGGTAGTAGTCCCGGTGATGCCGCCATATTTCGAGTTTTAGGTGATCTAG
CTGATGAACTAAGGCGTTCCATTGACTTTCATACTAGTCAAAATGCTGGTTCGGATGTAATCCAACTATTAATTGTTGGA
CCTGGAGCATGTATTGGTGAACTCAGTGAGTTTTTCAGTCAAAGACTTGGAATTGCCGCATCCCAAGTTGATCCCCTTGA
AGCATTGTCAATAAGTAGTGATGTCGAAATTCCCAAGCAAGAAAGAATGGGAATGTCAGTCGTGTTGGGTTTAAGTGTGA
GGGAGCCTTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(22-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9SSJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

49.051

98.138

0.481

Multiple sequence alignment